[Bug]: jekyll reports two files have conflicts but they are the same file.

[xinghengwang]

Operating System

Mac OS 12.6

Ruby Version

ruby 3.0.0p0 (2020-12-25 revision 95aff21468) [x86_64-darwin20]

Jekyll Version

jekyll 4.2.2

GitHub Pages Version

latest

Expected Behavior

I expect two files are same file to not result in a conflict warning when I run bundle exec jekyll serve

          Conflict: The following destination is shared by multiple files.
                    The written file may end up with unexpected contents.
                    /Users/Xingheng/repos/_site/guides/guide-on-tracking-API-calls-by-user-django-rest-api/index.html
                     - _guides/800-guide-django-rest-server-user-tracking.md
                     - /Users/Xingheng/repos/_guides/800-guide-django-rest-server-user-tracking.md

Current Behavior

          Conflict: The following destination is shared by multiple files.
                    The written file may end up with unexpected contents.
                    /Users/Xingheng/repos/_site/guides/guide-on-tracking-API-calls-by-user-django-rest-api/index.html
                     - _guides/800-guide-django-rest-server-user-tracking.md
                     - /Users/Xingheng/repos/_guides/800-guide-django-rest-server-user-tracking.md

Seems it thinks full path /User/Xingheng/repos/_guides/filename.md is a different file than relative path_guides/filenname.md

Relevant log output

Conflict: The following destination is shared by multiple files.
                    The written file may end up with unexpected contents.
                    /Users/Xingheng/repos/_site/guides/guide-on-tracking-API-calls-by-user-django-rest-api/index.html
                     - _guides/800-guide-django-rest-server-user-tracking.md
                     - /Users/Xingheng/repos/_guides/800-guide-django-rest-server-user-tracking.md

### Code Sample

bundle install 
bundle exec jekyll serve

[ashmaroli]

This is a strange bug.
@xinghengwang Are you using any plugins? I wonder how there are two copies of the same file..

[xinghengwang]

Yeah, it is wierd. since they are basically same file. one is aboslute path (as on my mac), one is relative to the "root" of the repo.

These are my plugins.

source "https://rubygems.org"

gem "jekyll", group: :jekyll_plugins
gem "json"

group :jekyll_plugins do
  gem "jekyll-paginate"
  gem "jekyll-sitemap"
  gem "jekyll-gist"
  gem "jekyll-feed"
  gem "jemoji"
  gem "jekyll-redirect-from"
  gem "jekyll-remote-include"
  gem "jekyll-include-cache"
  gem "jekyll-algolia"
  gem "kramdown-parser-gfm"
end

gem "webrick", "~> 1.7"

[ashmaroli]

Can you try building without jekyll-algolia, jekyll-redirect-from and jekyll-paginate plugins. If it works, build progressively by adding one of the above plugin back, one-at-a-time to check which plugin could be at fault.

[jekyllbot]

This issue has been automatically marked as stale because it has not been commented on for at least two months.

The resources of the Jekyll team are limited, and so we are asking for your help.

If this is a bug and you can still reproduce this error on the latest 3.x-stable or master/main branch, please reply with all of the information you have about it in order to keep the issue open.

If this is a feature request, please consider building it first as a plugin. Jekyll 3 introduced hooks which provide convenient access points throughout the Jekyll build pipeline whereby most needs can be fulfilled. If this is something that cannot be built as a plugin, then please provide more information about why in order to keep this issue open.

This issue will automatically be closed in two months if no further activity occurs. Thank you for all your contributions.