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By default you don't see _layouts, _includes folders because the theme uses the ones stored in the gem. In order to customize a theme, you'll need to override theme's files or add new ones.
To know that, you must able to study the theme's files, for minima an easy way is to look at the code on this repository.
I have learn that to add mathjax, I have to include mathjax scrpit in " layouts" folder. "http://stackoverflow.com/questions/10987992/using-mathjax-with-jekyll"
In minima version, there is no "layout"folder.
http://stackoverflow.com/questions/38891463/jekyll-default-installation-doesnt-have-layouts-directory
Is there any way to include mathjax in minima?
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