Unfavorable-Haplotype-Finder is a software identify haplotypes contained within a run of homozygosity (ROH) that give rise to an unfavorable phenotype. An updated version that corrected minor bugs was uploaded on November 18, 2017.
It utilizes Intel MKL and Eigen libraries to perform matrix multiplication and is multi-threaded.
The user manual contains all the necessary information to run the program along with an example.
Linux Executable Files:
- Haplofinder
Information Files:
- Unfavorable-Haplotype-Finder Manual
- haplo_geno.txt
- haplo_map.txt
- haplo_pheno.txt
- Parameter_File
- pedigree.txt
- asreml_check.as
- asreml_null.as
Source Code Files:
- Scan_Genome_Final.cpp
- HaplofinderClasses.cpp
- HaplofinderClasses.h
- makefile
If there are any questions or comments please contact me at "jthoward@ncsu.edu".