SLIT-Net

This repository contains the code for "J. Loo, M.F. Kriegel, M.M. Tuohy, K.H. Kim, V. Prajna, M.A. Woodward, and S. Farsiu, “Open-source automatic segmentation of ocular structures and biomarkers of microbial keratitis on slit-lamp photography images using deep learning”, IEEE Journal of Biomedical Health and Informatics 25(1), 88-99, 2021"

Link: https://ieeexplore.ieee.org/document/9050902
DOI: 10.1109/JBHI.2020.2983549

• Dataset download

  • Please download the datasets from: https://duke.box.com/s/iess8rryyn6oo5607aj83tl1hg3o49kk

• Trained models download

  • Please download the trained models from: https://duke.box.com/s/lm1im3y5oy2k574ng0yjxm89ubis8z40

• Dataset preparation

  • Please see SLITNet_splitDatasets.m

• Running SLIT-Net

  • Please see SLITNet_pipeline_white.sh and SLITNet_pipeline_blue.sh