Use output of Prodigal for VirFinder

[drelo]

Dear developers, I have a brief question after running megahit I run prodigal for all my metagenomic samples (using the -meta flag) for using them in other analyses.
Should I use the prodigal output instead of the initial output of megahit? Would this improve or acsellerate the estimation? I noticed in the publication that you used Prodigal to corroborate the results (and I will use blastn to assess the taxonomy of the contigs identified by VirFinder).

Thanks for your help.

[jessieren]

Hi drelo,

Sorry for my late response. If you still need help, you may contact Nathan Ahlgren @nahlgren for help.

Best,
Jessie

[drelo]

No problem, thanks for the heads up Best, Andres El dom, 15 ago 2021 a las 14:10, Jessie Jie Ren ***@***.***>) escribió:

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Hi drelo, Sorry for my late response. If you still need help, you may contact Nathan Ahlgren @nahlgren <https://github.com/nahlgren> for help. Best, Jessie — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#25 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACO2NCUKESW2GJS6WGCI3FLT47YJDANCNFSM43GAAX5A> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&utm_campaign=notification-email> .