jferna10 / scripts Public

Non standard scripts commonly used in my other work

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Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
L1_intersect.sh		L1_intersect.sh
README.md		README.md
blat_range.sh		blat_range.sh
build_dreme_neg.class		build_dreme_neg.class
build_dreme_neg.java		build_dreme_neg.java
build_repeat_custom_track.sh		build_repeat_custom_track.sh
count_mismatches.class		count_mismatches.class
count_mismatches.java		count_mismatches.java
count_mistmatches.java		count_mistmatches.java
dremeZNF.sh		dremeZNF.sh
extract_aligned.class		extract_aligned.class
extract_aligned.java		extract_aligned.java
extract_del.java		extract_del.java
faMultilineToSingle.sh		faMultilineToSingle.sh
getDE_nt.sh		getDE_nt.sh
logo_subseq.sh		logo_subseq.sh
make_composite_trackdb.sh		make_composite_trackdb.sh
make_trackdb.sh		make_trackdb.sh
mapInfoToBed.sh		mapInfoToBed.sh
matchesToBed.sh		matchesToBed.sh
mismatchpie.class		mismatchpie.class
mismatchpie.java		mismatchpie.java
psl2cov.sh		psl2cov.sh
rm_out2bed.sh		rm_out2bed.sh
scripts		scripts
splitTE.sh		splitTE.sh
strict_dreme_neg.class		strict_dreme_neg.class
strict_dreme_neg.java		strict_dreme_neg.java
strict_dreme_neg_old.java		strict_dreme_neg_old.java
test.fa		test.fa
un_logo_subseq.sh		un_logo_subseq.sh
unbound_TEs.sh		unbound_TEs.sh
uniqueToFileOne.sh		uniqueToFileOne.sh