complex-coinfection-inference

Bayesian inference of effective contagion models from population level data, with STAN.

More information:

• Paper: "Macroscopic patterns of interacting contagions are indistinguishable from social reinforcement", L. Hébert-Dufresne, S. V. Scarpino and J.-G. Young, Nature Physics, 2020. Also available as arXiv:1906.01147.
• Technical details: See this Supplementary Information document
• Slides: Bayesian inference of effective contagion models from population level data - J.-G. Young
• More slides: Interacting simple contagions are complex contagions - L. Hébert-Dufresne