HDF5 Upload Cutout Tutorial (RemoteExtension Branch)

Assuming that you have followed the instructions in the Boss Upload Cutout Tutorial, this tutorial shows you how to upload a cutout taken from the BOSS to a newly created HDF5 local file.

import intern
from intern.remote.local import LocalRemote
from intern.remote.boss import BossRemote
from intern.resource.boss.resource import ChannelResource
import matplotlib.pyplot as plt
import numpy as np

# BOSS Data fetch which we will upload to the Local Storage:
boss = BossRemote({
    "protocol": "https",
    "host": "api.theboss.io",
    "token": "token",
})
volumeB = boss.get_cutout(
    boss.get_channel("em", "pinky40", "v7"), 1,
    [10000, 10200], [10000, 10090], [500, 520],
)

#First start remote with path to be adressed and datastore name
#If the datastore name does not exist in the specified path, it will be create_dataset
#otherwise you may continue.
local = LocalRemote({
    "host": "/Users/rodrilm2/InternRel/",
    "datastore":"LocalBossDummy2"
    })

chan_setup = local.get_channel('em','pinky40')
proj = local.create_project(chan_setup)
volume = local.create_cutout(proj,'v1',volumeB)