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build.sbt
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build.sbt
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import com.typesafe.config._
import com.typesafe.sbt.packager.docker.Cmd
lazy val conf = ConfigFactory.parseFile(new File("conf/application.conf")).resolve()
lazy val commonSettings = Seq(
turbo := true,
useCoursier := true,
scalaVersion := "2.13.6",
javacOptions ++= Seq("-source", "15", "-target", "15"),
scalacOptions += "-target:jvm-15",
resolvers += Resolver.mavenLocal,
developers := List(Developer(id="jiemakel",name="Eetu Mäkelä",email="eetu.makela@iki.fi",url=url("http://iki.fi/eetu.makela"))),
organization := "io.github.hsci-r",
description := "Octavo - Open API for Text and Metadata, built using the Play framework",
licenses := List("MIT" -> new URL("https://opensource.org/licenses/MIT")),
homepage := Some(url("https://github.com/hsci-r/octavo/")),
scmInfo := Some(
ScmInfo(
url("https://github.com/hsci-r/octavo"),
"scm:git@github.com:hsci-r/octavo.git"
)
),
version := conf.getString("app.version"),
resolvers ++= Seq("ImageJ" at "https://maven.imagej.net/content/repositories/releases/", "betadriven" at "https://nexus.bedatadriven.com/content/groups/public/")
)
lazy val mainSettings = Seq(
name := "octavo",
libraryDependencies ++= Seq(
guice,
"org.scala-lang.modules" %% "scala-parallel-collections" % "1.0.3",
"commons-codec" % "commons-codec" % "1.15",
"fi.hsci" %% "lucene-perfieldpostingsformatordtermvectorscodec" % "1.2.9",
"org.apache.lucene" % "lucene-core" % "8.9.0",
"org.apache.lucene" % "lucene-codecs" % "8.9.0",
"org.apache.lucene" % "lucene-backward-codecs" % "8.9.0",
"org.apache.lucene" % "lucene-analyzers-common" % "8.9.0",
"fi.seco" %% "lucene-morphologicalanalyzer" % "1.2.1",
"fi.seco" % "lexicalanalysis-resources-fi-core" % "1.5.16",
"fi.hsci" %% "lucene-normalisinganalyzer" % "1.1.0",
"org.apache.lucene" % "lucene-queryparser" % "8.9.0",
"org.apache.lucene" % "lucene-highlighter" % "8.9.0",
"com.koloboke" % "koloboke-api-jdk8" % "1.0.0",
"com.koloboke" % "koloboke-impl-jdk8" % "1.0.0",
"com.beachape" %% "enumeratum" % "1.6.1",
// "com.bizo" %% "mighty-csv" % "0.2",
"com.tdunning" % "t-digest" % "3.3",
"org.codehaus.groovy" % "groovy-jsr223" % "3.0.8",
"org.scijava" % "scripting-jython" % "1.0.0",
"org.jetbrains.kotlin" % "kotlin-compiler-embeddable" % "1.5.10",
"org.jetbrains.kotlin" % "kotlin-script-runtime" % "1.5.10",
"org.jetbrains.kotlin" % "kotlin-script-util" % "1.5.10",
"org.jetbrains.kotlin" % "kotlin-stdlib" % "1.5.10",
"mdsj" % "mdsj" % "0.2",
// "org.nd4j" % "nd4j-native-platform" % "1.0.0-beta4",
"org.deeplearning4j" % "deeplearning4j-core" % "1.0.0-beta4",
"com.jujutsu.tsne" % "tsne" % "2.5.0",
"org.jetbrains.xodus" % "xodus-environment" % "1.3.232" exclude("org.jetbrains","annotations"),
"com.github.tototoshi" %% "scala-csv" % "1.3.8",
"ch.qos.logback" % "logback-classic" % "1.2.3"
)
)
lazy val dockerSettings = Seq(
maintainer := "Eetu Mäkelä <eetu.makela@iki.fi>",
packageSummary := "octavo",
packageDescription := "Octavo - Open API for Text and Metadata, built using the Play framework",
dockerBaseImage := "adoptopenjdk/openjdk15-openj9",
dockerExposedPorts := Seq(9000, 9443),
dockerEnvVars := Map("JAVA_OPTS"->"-Dindices.index=/opt/docker/index"),
dockerExposedVolumes := Seq("/opt/docker/logs","/opt/docker/index","/opt/docker/tmp"),
dockerRepository := Some("quay.io"),
dockerUsername := Some("hsci"),
Docker / daemonUserUid := None,
Docker / daemonUser := "daemon",
dockerUpdateLatest := true,
dockerCommands := dockerCommands.value ++ Seq(Cmd("USER","root"),Cmd("RUN","apt-get","-y","update"),Cmd("RUN","apt-get","-y","install","rsync"),Cmd("RUN","chmod","a+rwx","/opt/docker/tmp","/opt/docker/logs"),Cmd("USER","65536"))
/*,
dockerCommands := {
val s1 = dockerCommands.value.indexWhere{case Cmd("COPY",_) => true; case _ => false} + 1
val (h1,t1) = dockerCommands.value.splitAt(s1)
val s2 = t1.indexWhere{case Cmd("FROM",_) => true; case _ => false} + 1
val (h2,t2) = t1.splitAt(s2)
val s3 = t2.indexWhere{case Cmd("COPY",_) => true; case _ => false} + 1
val (h3,t3) = t2.splitAt(s3)
h1 ++
Seq(ExecCmd("RUN","rm","/opt/docker/conf/application.conf","/opt/docker/lib/"+organization.value+"."+name.value+"-"+version.value+"-sans-externalized.jar","/opt/docker/lib/"+organization.value+"."+name.value+"-"+version.value+"-assets.jar")) ++
h2 ++
Seq(Cmd("RUN","apt","update"),Cmd("RUN","apt","install","rsync","openssh")) ++
h3 ++
Seq(
Cmd("COPY","opt/docker/conf/application.conf","/opt/docker/conf/application.conf"),
Cmd("COPY","opt/docker/lib/"+organization.value+"."+name.value+"-"+version.value+"-sans-externalized.jar","opt/docker/lib/"+organization.value+"."+name.value+"-"+version.value+"-assets.jar","/opt/docker/lib/")
) ++
t3
}*/
)
lazy val assemblySettings = Seq(
assembly / mainClass := Some("play.core.server.ProdServerStart"),
assembly / fullClasspath += Attributed.blank(PlayKeys.playPackageAssets.value),
Compile / assembly / artifact := {
val art = (compile / assembly / artifact).value
art.withClassifier(Some("assembly"))
},
assembly / assemblyMergeStrategy := {
case PathList("org","nd4j","serde","base64","Nd4jBase64.class") => MergeStrategy.first
case PathList("org", "jetbrains", "annotations", xs @ _*) => MergeStrategy.first // these appear in multiple places
case manifest if manifest.contains("MANIFEST.MF") =>
MergeStrategy.discard
case referenceOverrides if referenceOverrides.contains("reference-overrides.conf") =>
MergeStrategy.concat
case PathList("META-INF", xs @ _*) if xs.exists(_.endsWith("kotlin_module")) => MergeStrategy.first
case PathList("META-INF", "json", "org.scijava.plugin.Plugin") => MergeStrategy.first
case PathList("META-INF", "native", xs @ _*) => MergeStrategy.first
case PathList("org", "junit", xs @ _*) => MergeStrategy.first // tsne is borked
case PathList("org", "hamcrest", xs @ _*) => MergeStrategy.first
case PathList("junit", xs @ _*) => MergeStrategy.first
case "overview.html" => MergeStrategy.discard
case x =>
val oldStrategy = (assembly / assemblyMergeStrategy).value
oldStrategy(x)
}
) // ++ addArtifact(artifact in (Compile, assembly), assembly).settings
lazy val publishSettings = Seq(
pomIncludeRepository := { _ => false },
publishMavenStyle := true,
publishTo := sonatypePublishTo.value
)
lazy val octavo = (project in file("."))
.settings(commonSettings:_*)
.settings(mainSettings:_*)
.settings(dockerSettings:_*)
.settings(assemblySettings:_*)
.settings(publishSettings:_*)
// .settings(publishArtifact in (Compile, assembly) := false)
.enablePlugins(
PlayScala,
SystemdPlugin,
DockerPlugin,
AshScriptPlugin)
lazy val octavoAssembly = (project in file("build/assembly"))
.settings(commonSettings:_*)
.settings(name := "octavo-assembly")
.settings(publishSettings:_*)
.disablePlugins(AssemblyPlugin)
.settings(Compile / packageBin := (octavo / Compile / assembly).value)
lazy val rootSettings = Seq(
publishArtifact := false,
Test / publishArtifact := false
)
lazy val root = (project in file("build/root"))
.settings(commonSettings:_*)
.settings(rootSettings:_*)
.disablePlugins(AssemblyPlugin)
.aggregate(octavo,octavoAssembly)