CyTOF data includes several event types that should be removed from the data prior to analysis. The package cytofQC uses learning algorithms to identify and label each event in a CyTOF dataset as a bead, doublet, debris, dead cell, GDP zero (meaning at least one of the QC variables was 0), or a viable cell.
Authors: Jill Lundell and Kelly Street
Maintainer: Jill Lundell jflundell@gmail.com
To install this package, start R and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("cytofQC")
To view the documentation for the version of this package installed on your system, start R and enter:
browseVignettes("cytofQC")