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Error when running split_fasta.pl #5

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shenwei356 opened this issue Mar 15, 2016 · 0 comments
Open

Error when running split_fasta.pl #5

shenwei356 opened this issue Mar 15, 2016 · 0 comments

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@shenwei356
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Hi @jimhester , it failed to run split_fasta.pl

$ split_fasta.pl -amount 2 dataset_A.fa -force
dataset_A.fa:  98% [==================================*============================================  ]0m00s
 LeftNot an ARRAY reference at /usr/local/bin/split_fasta.pl line 118, <$_[...]> line 175365.
$ split_fasta.pl -amount 2 dataset_B.fa -force                                
dataset_B.fa:  56% [*=============================================                                   ]0m00s 
LeftNot an ARRAY reference at /usr/local/bin/split_fasta.pl line 118, <$_[...]> line 7.
$ split_fasta.pl -amount 2 dataset_RNA.fasta -force                           
Not an ARRAY reference at /usr/local/bin/split_fasta.pl line 118, <$_[...]> line 101.

I checked the code and printed the type of $seq_ref, it was REF, and there was error information:

Virtual timer expired

By the way, I'm writing a FASTA kit, named fakit, and I've done some benchmarks with similar tools, including fasta_utilities. Could you please take few minutes to look and give some advice?

sincerely,
Wei

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