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Comments #1

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zhanxw opened this issue Sep 22, 2023 · 4 comments

Collaborator

zhanxw commented Sep 22, 2023

"-t" options
example on normalization
Thanks.

Collaborator Author

zhanxw commented Oct 11, 2023

For the -t option, can users input multiple taxonomy IDs?

Owner

jiwoongbio commented Oct 11, 2023

Yes. You can specify comma-separated taxonomy IDs or multiple -t options like -t 287 -t 562

Collaborator Author

zhanxw commented Nov 1, 2023

Is the output result already normalized?

e.g. ERR3152364.NanoPrism.abundance.txt

K00001	0.42701249216754
K00003	0.107892487472779
K00004	0.528139684414812
K00005	0.172696194384774
K00008	0.322533489754937
K00009	0.0926147658197949
...

Owner

jiwoongbio commented Nov 1, 2023

Yes. The values are normalized by dividing by the mean value of K02950, K02874, K02946, K02948, K02867, K02952, K02886, K02988, K02992, K02965.

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