A plugin of a plugin.
This software adds a new cell detector to TrackMate, a cell/object tracker plugin for ImageJ. The detector uses a pretrained deep-learning model to detect and segment cells.
- Install Lacss according to its documentation
- Copy the Jar file into ImageJ's plugin folder.
The plugin is a thin Java wrapper around the Lacss python module, which runs as a separate process. The Java code communicate with the Python process via anonymous pipe, by sending/receiving messages encoded in protobuf.