Merge branch 'main' of https://github.com/jjjermiah/NBIA-toolkit

README.md

@@ -43,6 +43,38 @@ pip install nbiatoolkit
 nbia-toolkit also provides a command line interface (CLI) to query the NBIA database for some queries.
 ``` bash NBIAToolkit-Output
 > NBIAToolkit --version
+    _   ______  _______  ______            ____   _ __ 
+   / | / / __ )/  _/   |/_  __/___  ____  / / /__(_) /_
+  /  |/ / __  |/ // /| | / / / __ \/ __ \/ / //_/ / __/
+ / /|  / /_/ // // ___ |/ / / /_/ / /_/ / / ,< / / /_  
+/_/ |_/_____/___/_/  |_/_/  \____/\____/_/_/|_/_/\__/  
+
+
+Version: 0.16.0
+
+Available CLI tools: 
+
+getCollections [-h] [-p PREFIX] [-o OUTPUTFILE] [--version]
+
+getPatients [-h] -c COLLECTION [-o OUTPUTFILE] [--version]
+
+getBodyPartCounts [-h] [-c COLLECTION] [-o OUTPUTFILE] [--version]
+
+getSeries [-h] [-c COLLECTION] [-p PATIENTID] [-m MODALITY]
+          [-study STUDYINSTANCEUID]
+          [--seriesInstanceUID SERIESINSTANCEUID]
+          [--bodyPartExamined BODYPARTEXAMINED]
+          [--manufacturerModelName MANUFACTURERMODELNAME]
+          [--manufacturer MANUFACTURER] [-o OUTPUTFILE] [--version]
+
+downloadSingleSeries [-h] --seriesUID SERIESUID --downloadDir
+                     DOWNLOADDIR [--filePattern FILEPATTERN]
+                     [--overwrite]
+
+dicomsort [-h] [--targetPattern TARGETPATTERN] [--truncateUID]
+          [--sanitizeFilename] [--overwrite] [--nParallel NPARALLEL]
+          sourceDir destinationDir
+
 ```