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fix:build
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@jjjermiah
jjjermiah committed Jan 28, 2024
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356 changes: 178 additions & 178 deletions .github/workflows/main.yml
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branches: [ main ]

jobs:
# Continuous-Integration:
# runs-on: ${{ matrix.os }}
# strategy:
# matrix:
# os: [ubuntu-latest, macos-latest]
# python-version: ["3.12"]
Continuous-Integration:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, macos-latest]
python-version: ["3.12"]

# steps:
# - uses: actions/checkout@v3

# - name: Set up Python ${{ matrix.python-version }}
# uses: actions/setup-python@v4
# with:
# python-version: ${{ matrix.python-version }}

# - name: Install poetry
# uses: snok/install-poetry@v1

# - name: Test with pytest
# run: |
# pip install -r requirements.txt
# poetry install
# pytest --cov --cov-report=xml:coverage-report/coverage.xml

# - name: Build documentation
# run: poetry run make html --directory docs/

# - name: Upload coverage report
# uses: actions/upload-artifact@v2
# with:
# name: coverage-report
# path: coverage-report

# Codecov:
# needs: Continuous-Integration
# runs-on: ubuntu-latest
# steps:
# - name: Checkout code
# uses: actions/checkout@v3

# - name: Download coverage.xml artifact
# uses: actions/download-artifact@v2
# with:
# name: coverage-report
# path: coverage-report

# - name: Use Codecov to track coverage
# uses: codecov/codecov-action@v3
# with:
# CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
# files: ./coverage-report/coverage.xml
# fail_ci_if_error: true
# verbose: true
# name: codecov-umbrella

# Continuous-Deployment:
# permissions:
# contents: write
# packages: write
# issues: write
# pull-requests: write

# # needs: Continuous-Integration

# # if pulling to main, deploy to PyPI
# if: github.ref == 'refs/heads/main'

# # Set up operating system
# runs-on: ubuntu-latest

# # Define job steps
# steps:
# - name: Set up Python 3.12
# uses: actions/setup-python@v2
# with:
# python-version: 3.12

# - name: Check-out repository
# uses: actions/checkout@v2
# with:
# fetch-depth: 0

# - name: Install poetry
# uses: snok/install-poetry@v1

# - name: Install package
# run: poetry install

# # This action uses Python Semantic Release v8
# # What this action does:
# # - Determines the next version number based on the commit history
# # - Creates a new tag with the new version number
# # - Pushes the new tag to GitHub
# # - Creates a GitHub release with the new version number
# - name: Python Semantic Release
# id: release
# uses: python-semantic-release/python-semantic-release@master
# with:
# github_token: ${{ secrets.GITHUB_TOKEN }}

# - name: Install packaging-related tool
# run:
# python3 -m pip install build twine

# # Build Package step:
# # After semantic release, we should have a new tag if the commit history
# # has been updated. If there isnt a new tag, then we dont need to build
# # a new package. If there is a new tag, then we need to build a new package
# # and publish it to PyPI
# - name: Build package
# if: steps.release.outputs.released == 'true'
# run: |
# poetry version $(git describe --tags --abbrev=0 | sed 's/^v//')
# python -m build --sdist --wheel --outdir dist/ .
# echo "LATEST_TAG=$(poetry version | sed 's/^nbiatoolkit //')" >> "$GITHUB_ENV"

# - name: Publish package distributions to PyPI
# if: steps.release.outputs.released == 'true'
# uses: pypa/gh-action-pypi-publish@release/v1
# with:
# verbose: true
# user: __token__
# password: ${{ secrets.PYPI_API_TOKEN }}

# - name: Print latest tag name
# run: |
# printf "%s\n" "${LATEST_TAG}"

# - name: Print branch name
# run: |
# printf "LATEST TAG: %s\n" "${LATEST_TAG}"
# echo "DOCKER_IMAGE_TAG=${LATEST_TAG}" >> "$GITHUB_ENV"
# printf "DOCKER_IMAGE_TAG: %s\n" "${DOCKER_IMAGE_TAG}"

# - name: Set up QEMU
# if: steps.release.outputs.released == 'true'
# uses: docker/setup-qemu-action@v3

# - name: Set up Docker Buildx
# if: steps.release.outputs.released == 'true'
# uses: docker/setup-buildx-action@v3

# - name: Login to Docker Hub
# if: steps.release.outputs.released == 'true'
# uses: docker/login-action@v3
# with:
# username: ${{ secrets.DOCKERHUB_USERNAME }}
# password: ${{ secrets.DOCKERHUB_TOKEN }}

# - name: Login to the GitHub Container Registry
# if: steps.release.outputs.released == 'true'
# uses: docker/login-action@v3
# with:
# registry: ghcr.io
# username: ${{ github.actor }}
# password: ${{ secrets.GITHUB_TOKEN }}

# - name: Extract metadata (tags, labels) for Docker
# id: meta
# uses: docker/metadata-action@v3
# with:
# images: |
# ${{ secrets.DOCKERHUB_USERNAME }}/nbiatoolkit:${{ env.DOCKER_IMAGE_TAG }}
# ghcr.io/${{ github.repository }}/nbiatoolkit:${{ env.DOCKER_IMAGE_TAG }}

# - name: Build
# if: steps.release.outputs.released == 'true'
# uses: docker/build-push-action@v5
# with:
# context: .
# platforms: linux/amd64,linux/arm64
# file: ./Dockerfile
# push: true
# tags: |
# ${{ secrets.DOCKERHUB_USERNAME }}/nbiatoolkit:${{ env.DOCKER_IMAGE_TAG }}
# ${{ secrets.DOCKERHUB_USERNAME }}/nbiatoolkit:latest
# ghcr.io/${{ github.repository }}/nbiatoolkit:${{ env.DOCKER_IMAGE_TAG }}
# ghcr.io/${{ github.repository }}/nbiatoolkit:latest
# labels: ${{ steps.meta.outputs.labels }}
steps:
- uses: actions/checkout@v3

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}

- name: Install poetry
uses: snok/install-poetry@v1

- name: Test with pytest
run: |
pip install -r requirements.txt
poetry install
pytest --cov --cov-report=xml:coverage-report/coverage.xml
- name: Build documentation
run: poetry run make html --directory docs/

- name: Upload coverage report
uses: actions/upload-artifact@v2
with:
name: coverage-report
path: coverage-report

Codecov:
needs: Continuous-Integration
runs-on: ubuntu-latest
steps:
- name: Checkout code
uses: actions/checkout@v3

- name: Download coverage.xml artifact
uses: actions/download-artifact@v2
with:
name: coverage-report
path: coverage-report

- name: Use Codecov to track coverage
uses: codecov/codecov-action@v3
with:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
files: ./coverage-report/coverage.xml
fail_ci_if_error: true
verbose: true
name: codecov-umbrella

Continuous-Deployment:
permissions:
contents: write
packages: write
issues: write
pull-requests: write

# needs: Continuous-Integration

# if pulling to main, deploy to PyPI
if: github.ref == 'refs/heads/main'

# Set up operating system
runs-on: ubuntu-latest

# Define job steps
steps:
- name: Set up Python 3.12
uses: actions/setup-python@v2
with:
python-version: 3.12

- name: Check-out repository
uses: actions/checkout@v2
with:
fetch-depth: 0

- name: Install poetry
uses: snok/install-poetry@v1

- name: Install package
run: poetry install

# This action uses Python Semantic Release v8
# What this action does:
# - Determines the next version number based on the commit history
# - Creates a new tag with the new version number
# - Pushes the new tag to GitHub
# - Creates a GitHub release with the new version number
- name: Python Semantic Release
id: release
uses: python-semantic-release/python-semantic-release@master
with:
github_token: ${{ secrets.GITHUB_TOKEN }}

- name: Install packaging-related tool
run:
python3 -m pip install build twine

# Build Package step:
# After semantic release, we should have a new tag if the commit history
# has been updated. If there isnt a new tag, then we dont need to build
# a new package. If there is a new tag, then we need to build a new package
# and publish it to PyPI
- name: Build package
if: steps.release.outputs.released == 'true'
run: |
poetry version $(git describe --tags --abbrev=0 | sed 's/^v//')
python -m build --sdist --wheel --outdir dist/ .
echo "LATEST_TAG=$(poetry version | sed 's/^nbiatoolkit //')" >> "$GITHUB_ENV"
- name: Publish package distributions to PyPI
if: steps.release.outputs.released == 'true'
uses: pypa/gh-action-pypi-publish@release/v1
with:
verbose: true
user: __token__
password: ${{ secrets.PYPI_API_TOKEN }}

- name: Print latest tag name
run: |
printf "%s\n" "${LATEST_TAG}"
- name: Print branch name
run: |
printf "LATEST TAG: %s\n" "${LATEST_TAG}"
echo "DOCKER_IMAGE_TAG=${LATEST_TAG}" >> "$GITHUB_ENV"
printf "DOCKER_IMAGE_TAG: %s\n" "${DOCKER_IMAGE_TAG}"
- name: Set up QEMU
if: steps.release.outputs.released == 'true'
uses: docker/setup-qemu-action@v3

- name: Set up Docker Buildx
if: steps.release.outputs.released == 'true'
uses: docker/setup-buildx-action@v3

- name: Login to Docker Hub
if: steps.release.outputs.released == 'true'
uses: docker/login-action@v3
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_TOKEN }}

- name: Login to the GitHub Container Registry
if: steps.release.outputs.released == 'true'
uses: docker/login-action@v3
with:
registry: ghcr.io
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}

- name: Extract metadata (tags, labels) for Docker
id: meta
uses: docker/metadata-action@v3
with:
images: |
${{ secrets.DOCKERHUB_USERNAME }}/nbiatoolkit:${{ env.DOCKER_IMAGE_TAG }}
ghcr.io/${{ github.repository }}/nbiatoolkit:${{ env.DOCKER_IMAGE_TAG }}
- name: Build
if: steps.release.outputs.released == 'true'
uses: docker/build-push-action@v5
with:
context: .
platforms: linux/amd64,linux/arm64
file: ./Dockerfile
push: true
tags: |
${{ secrets.DOCKERHUB_USERNAME }}/nbiatoolkit:${{ env.DOCKER_IMAGE_TAG }}
${{ secrets.DOCKERHUB_USERNAME }}/nbiatoolkit:latest
ghcr.io/${{ github.repository }}/nbiatoolkit:${{ env.DOCKER_IMAGE_TAG }}
ghcr.io/${{ github.repository }}/nbiatoolkit:latest
labels: ${{ steps.meta.outputs.labels }}

test_image_with_new_tag:
# needs: Continuous-Deployment
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