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@alicialara
alicialara committed Sep 19, 2022
1 parent 3bc7464 commit cb19ede
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Showing 24 changed files with 1,420 additions and 1,402 deletions.
Binary file modified HESML_Library/HESML/dist/HESML-V2R1.0.1.jar
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4 changes: 2 additions & 2 deletions HESML_Library/HESMLSTS/build/built-jar.properties
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#Mon, 19 Sep 2022 22:52:40 +0200
#Mon, 19 Sep 2022 23:08:17 +0200


/home/alicia/Desktop/HESML_LASTULTIMOESTESI/HESML_Library/HESMLSTS=
/home/user/HESML/HESML_Library/HESMLSTS=
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2 changes: 1 addition & 1 deletion HESML_Library/HESMLSTS/nbproject/private/private.properties
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Expand Up @@ -5,4 +5,4 @@ do.jlink=false
javac.debug=true
javadoc.preview=true
jlink.strip=false
user.properties.file=/home/alicia/.netbeans/12.2/build.properties
user.properties.file=/home/user/.netbeans/12.3/build.properties
34 changes: 17 additions & 17 deletions HESML_Library/HESMLSTS/nbproject/project.properties
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Expand Up @@ -34,23 +34,23 @@ dist.jar=${dist.dir}/HESMLSTS.jar
dist.javadoc.dir=${dist.dir}/javadoc
endorsed.classpath=
excludes=
file.reference.bioc-1.0.1.jar=../ImportedLibs/bioc-1.0.1.jar
file.reference.BioCPreprocessingPipeline.jar=../ImportedLibs/BioCPreprocessingPipeline.jar
file.reference.biolemmatizer-core-1.2.jar=../ImportedLibs/biolemmatizer-core-1.2.jar
file.reference.context-2012.jar=../ImportedLibs/context-2012.jar
file.reference.HESML-V2R1.0.1.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/HESML/dist/HESML-V2R1.0.1.jar
file.reference.json-20180813.jar=../ImportedLibs/json-20180813.jar
file.reference.json-simple-1.1.1.jar=../ImportedLibs/json-simple-1.1.1.jar
file.reference.log4j-api-2.1.jar=../ImportedLibs/log4j-api-2.1.jar
file.reference.log4j-core-2.1.jar=../ImportedLibs/log4j-core-2.1.jar
file.reference.lvgdist-2020.0.jar=../ImportedLibs/lvgdist-2020.0.jar
file.reference.mysql-connector-java-8.0.20.jar=../ImportedLibs/mysql-connector-java-8.0.20.jar
file.reference.nlp-2.4.C.jar=../ImportedLibs/nlp-2.4.C.jar
file.reference.opencsv-2.3.jar=../ImportedLibs/opencsv-2.3.jar
file.reference.opennlp-maxent-3.0.3.jar=../ImportedLibs/opennlp-maxent-3.0.3.jar
file.reference.opennlp-tools-1.5.3.jar=../ImportedLibs/opennlp-tools-1.5.3.jar
file.reference.slib-dist-0.9-all-jar.jar=../ImportedLibs/slib-dist-0.9-all-jar.jar
file.reference.stanford-corenlp-4.2.0.jar=../ImportedLibs/stanford-corenlp-4.2.0.jar
file.reference.bioc-1.0.1.jar=/home/user/HESML/HESML_Library/ImportedLibs/bioc-1.0.1.jar
file.reference.BioCPreprocessingPipeline.jar=/home/user/HESML/HESML_Library/ImportedLibs/BioCPreprocessingPipeline.jar
file.reference.biolemmatizer-core-1.2.jar=/home/user/HESML/HESML_Library/ImportedLibs/biolemmatizer-core-1.2.jar
file.reference.context-2012.jar=/home/user/HESML/HESML_Library/ImportedLibs/context-2012.jar
file.reference.HESML-V2R1.0.1.jar=/home/user/HESML/HESML_Library/HESML/dist/HESML-V2R1.0.1.jar
file.reference.json-20180813.jar=/home/user/HESML/HESML_Library/ImportedLibs/json-20180813.jar
file.reference.json-simple-1.1.1.jar=/home/user/HESML/HESML_Library/ImportedLibs/json-simple-1.1.1.jar
file.reference.log4j-api-2.1.jar=/home/user/HESML/HESML_Library/ImportedLibs/log4j-api-2.1.jar
file.reference.log4j-core-2.1.jar=/home/user/HESML/HESML_Library/ImportedLibs/log4j-core-2.1.jar
file.reference.lvgdist-2020.0.jar=/home/user/HESML/HESML_Library/ImportedLibs/lvgdist-2020.0.jar
file.reference.mysql-connector-java-8.0.20.jar=/home/user/HESML/HESML_Library/ImportedLibs/mysql-connector-java-8.0.20.jar
file.reference.nlp-2.4.C.jar=/home/user/HESML/HESML_Library/ImportedLibs/nlp-2.4.C.jar
file.reference.opencsv-2.3.jar=/home/user/HESML/HESML_Library/ImportedLibs/opencsv-2.3.jar
file.reference.opennlp-maxent-3.0.3.jar=/home/user/HESML/HESML_Library/ImportedLibs/opennlp-maxent-3.0.3.jar
file.reference.opennlp-tools-1.5.3.jar=/home/user/HESML/HESML_Library/ImportedLibs/opennlp-tools-1.5.3.jar
file.reference.slib-dist-0.9-all-jar.jar=/home/user/HESML/HESML_Library/ImportedLibs/slib-dist-0.9-all-jar.jar
file.reference.stanford-corenlp-4.2.0.jar=/home/user/HESML/HESML_Library/ImportedLibs/stanford-corenlp-4.2.0.jar
includes=**
jar.compress=false
javac.classpath=\
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4 changes: 2 additions & 2 deletions HESML_Library/HESMLSTSImpactEvaluationclient/build/built-jar.properties
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#Mon, 19 Sep 2022 22:52:45 +0200
#Mon, 19 Sep 2022 23:08:18 +0200


/home/alicia/Desktop/HESML_LASTULTIMOESTESI/HESML_Library/HESMLSTSImpactEvaluationclient=
/home/user/HESML/HESML_Library/HESMLSTSImpactEvaluationclient=
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2 changes: 1 addition & 1 deletion HESML_Library/HESMLSTSImpactEvaluationclient/nbproject/private/private.properties
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Expand Up @@ -6,4 +6,4 @@ do.jlink=false
javac.debug=true
javadoc.preview=true
jlink.strip=false
user.properties.file=/home/alicia/.netbeans/12.2/build.properties
user.properties.file=/home/user/.netbeans/12.3/build.properties
36 changes: 18 additions & 18 deletions HESML_Library/HESMLSTSImpactEvaluationclient/nbproject/project.properties
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Expand Up @@ -33,24 +33,24 @@ dist.jar=${dist.dir}/HESMLSTSImpactEvaluationclient.jar
dist.javadoc.dir=${dist.dir}/javadoc
endorsed.classpath=
excludes=
file.reference.bioc-1.0.1.jar=../ImportedLibs/bioc-1.0.1.jar
file.reference.BioCPreprocessingPipeline.jar=../ImportedLibs/BioCPreprocessingPipeline.jar
file.reference.biolemmatizer-core-1.2.jar=../ImportedLibs/biolemmatizer-core-1.2.jar
file.reference.context-2012.jar=../ImportedLibs/context-2012.jar
file.reference.HESML-V2R1.0.1.jar=../HESML/dist/HESML-V2R1.0.1.jar
file.reference.HESMLSTS-V2R1.0.1.jar=../HESMLSTS/dist/HESMLSTS-V2R1.0.1.jar
file.reference.json-20180813.jar=../ImportedLibs/json-20180813.jar
file.reference.json-simple-1.1.1.jar=../ImportedLibs/json-simple-1.1.1.jar
file.reference.log4j-api-2.1.jar=../ImportedLibs/log4j-api-2.1.jar
file.reference.log4j-core-2.1.jar=../ImportedLibs/log4j-core-2.1.jar
file.reference.lvgdist-2020.0.jar=../ImportedLibs/lvgdist-2020.0.jar
file.reference.mysql-connector-java-8.0.20.jar=../ImportedLibs/mysql-connector-java-8.0.20.jar
file.reference.nlp-2.4.C.jar=../ImportedLibs/nlp-2.4.C.jar
file.reference.opencsv-2.3.jar=../ImportedLibs/opencsv-2.3.jar
file.reference.opennlp-maxent-3.0.3.jar=../ImportedLibs/opennlp-maxent-3.0.3.jar
file.reference.opennlp-tools-1.5.3.jar=../ImportedLibs/opennlp-tools-1.5.3.jar
file.reference.slib-dist-0.9-all-jar.jar=../ImportedLibs/slib-dist-0.9-all-jar.jar
file.reference.stanford-corenlp-4.2.0.jar=../ImportedLibs/stanford-corenlp-4.2.0.jar
file.reference.bioc-1.0.1.jar=/home/user/HESML/HESML_Library/ImportedLibs/bioc-1.0.1.jar
file.reference.BioCPreprocessingPipeline.jar=/home/user/HESML/HESML_Library/ImportedLibs/BioCPreprocessingPipeline.jar
file.reference.biolemmatizer-core-1.2.jar=/home/user/HESML/HESML_Library/ImportedLibs/biolemmatizer-core-1.2.jar
file.reference.context-2012.jar=/home/user/HESML/HESML_Library/ImportedLibs/context-2012.jar
file.reference.HESML-V2R1.0.1.jar=/home/user/HESML/HESML_Library/HESML/dist/HESML-V2R1.0.1.jar
file.reference.HESMLSTS-V2R1.0.1.jar=/home/user/HESML/HESML_Library/HESMLSTS/dist/HESMLSTS-V2R1.0.1.jar
file.reference.json-20180813.jar=/home/user/HESML/HESML_Library/ImportedLibs/json-20180813.jar
file.reference.json-simple-1.1.1.jar=/home/user/HESML/HESML_Library/ImportedLibs/json-simple-1.1.1.jar
file.reference.log4j-api-2.1.jar=/home/user/HESML/HESML_Library/ImportedLibs/log4j-api-2.1.jar
file.reference.log4j-core-2.1.jar=/home/user/HESML/HESML_Library/ImportedLibs/log4j-core-2.1.jar
file.reference.lvgdist-2020.0.jar=/home/user/HESML/HESML_Library/ImportedLibs/lvgdist-2020.0.jar
file.reference.mysql-connector-java-8.0.20.jar=/home/user/HESML/HESML_Library/ImportedLibs/mysql-connector-java-8.0.20.jar
file.reference.nlp-2.4.C.jar=/home/user/HESML/HESML_Library/ImportedLibs/nlp-2.4.C.jar
file.reference.opencsv-2.3.jar=/home/user/HESML/HESML_Library/ImportedLibs/opencsv-2.3.jar
file.reference.opennlp-maxent-3.0.3.jar=/home/user/HESML/HESML_Library/ImportedLibs/opennlp-maxent-3.0.3.jar
file.reference.opennlp-tools-1.5.3.jar=/home/user/HESML/HESML_Library/ImportedLibs/opennlp-tools-1.5.3.jar
file.reference.slib-dist-0.9-all-jar.jar=/home/user/HESML/HESML_Library/ImportedLibs/slib-dist-0.9-all-jar.jar
file.reference.stanford-corenlp-4.2.0.jar=/home/user/HESML/HESML_Library/ImportedLibs/stanford-corenlp-4.2.0.jar
includes=**
jar.compress=false
javac.classpath=\
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6 changes: 6 additions & 0 deletions HESML_Library/HESMLSTSclient/Execution_times_BIOSSESNormalized_miliseconds.txt
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Expand Up @@ -72,3 +72,9 @@ LiBlock - MetamapLite_BIOSSESNormalized : 12675 ms
LiBlock - CTakes_BIOSSESNormalized : 2577 ms
worstCOM_worstWBSM_AncSPLRada_worstUBSM_AncSPLRada_BIOSSESNormalized : 17882 ms
bestCOM_bestWBSM_AncSPLRada_bestUBSM_AncSPLRada_BIOSSESNormalized : 3699 ms
Qgram_BIOSSESNormalized : 34 ms
OverlapCoefficient_BIOSSESNormalized : 46 ms
LiBlock_BIOSSESNormalized : 282 ms
Levenshtein_BIOSSESNormalized : 38 ms
Jaccard_BIOSSESNormalized : 28 ms
BlockDistance_BIOSSESNormalized : 24 ms
6 changes: 6 additions & 0 deletions HESML_Library/HESMLSTSclient/Execution_times_CTRNormalized_averagedScore_miliseconds.txt
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Expand Up @@ -122,3 +122,9 @@ LiBlock - Original_CTRNormalized_averagedScore : 67 ms
LiBlock - MetamapLite_CTRNormalized_averagedScore : 13589 ms
worstCOM_worstWBSM_AncSPLRada_worstUBSM_AncSPLRada_CTRNormalized_averagedScore : 24323 ms
bestCOM_bestWBSM_AncSPLRada_bestUBSM_AncSPLRada_CTRNormalized_averagedScore : 5282 ms
OverlapCoefficient_CTRNormalized_averagedScore : 51 ms
Jaccard_CTRNormalized_averagedScore : 45 ms
Levenshtein_CTRNormalized_averagedScore : 26 ms
LiBlock_CTRNormalized_averagedScore : 106 ms
BlockDistance_CTRNormalized_averagedScore : 45 ms
Qgram_CTRNormalized_averagedScore : 52 ms
6 changes: 6 additions & 0 deletions HESML_Library/HESMLSTSclient/Execution_times_MedStsFullNormalized_miliseconds.txt
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Expand Up @@ -125,3 +125,9 @@ LiBlock - CTakes_MedStsFullNormalized : 27434 ms
LiBlock - Metamap_MedStsFullNormalized : 152297 ms
worstCOM_worstWBSM_AncSPLRada_worstUBSM_AncSPLRada_MedStsFullNormalized : 145008 ms
bestCOM_bestWBSM_AncSPLRada_bestUBSM_AncSPLRada_MedStsFullNormalized : 33648 ms
LiBlock_MedStsFullNormalized : 611 ms
BlockDistance_MedStsFullNormalized : 250 ms
Levenshtein_MedStsFullNormalized : 210 ms
Qgram_MedStsFullNormalized : 287 ms
OverlapCoefficient_MedStsFullNormalized : 323 ms
Jaccard_MedStsFullNormalized : 250 ms
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36 changes: 18 additions & 18 deletions HESML_Library/HESMLSTSclient/nbproject/project.properties
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Expand Up @@ -33,24 +33,24 @@ dist.jar=${dist.dir}/HESMLSTSclient.jar
dist.javadoc.dir=${dist.dir}/javadoc
endorsed.classpath=
excludes=
file.reference.bioc-1.0.1.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/bioc-1.0.1.jar
file.reference.BioCPreprocessingPipeline.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/BioCPreprocessingPipeline.jar
file.reference.biolemmatizer-core-1.2.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/biolemmatizer-core-1.2.jar
file.reference.context-2012.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/context-2012.jar
file.reference.HESML-V2R1.0.1.jar=../HESML/dist/HESML-V2R1.0.1.jar
file.reference.HESMLSTS-V2R1.0.1.jar=../HESMLSTS/dist/HESMLSTS-V2R1.0.1.jar
file.reference.json-20180813.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/json-20180813.jar
file.reference.json-simple-1.1.1.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/json-simple-1.1.1.jar
file.reference.log4j-api-2.1.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/log4j-api-2.1.jar
file.reference.log4j-core-2.1.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/log4j-core-2.1.jar
file.reference.lvgdist-2020.0.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/lvgdist-2020.0.jar
file.reference.mysql-connector-java-8.0.20.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/mysql-connector-java-8.0.20.jar
file.reference.nlp-2.4.C.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/nlp-2.4.C.jar
file.reference.opencsv-2.3.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/opencsv-2.3.jar
file.reference.opennlp-maxent-3.0.3.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/opennlp-maxent-3.0.3.jar
file.reference.opennlp-tools-1.5.3.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/opennlp-tools-1.5.3.jar
file.reference.slib-dist-0.9-all-jar.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/slib-dist-0.9-all-jar.jar
file.reference.stanford-corenlp-4.2.0.jar=/home/alicia/Desktop/HESMLSTSFINAL/HESML_Library/ImportedLibs/stanford-corenlp-4.2.0.jar
file.reference.bioc-1.0.1.jar=/home/user/HESML/HESML_Library/ImportedLibs/bioc-1.0.1.jar
file.reference.BioCPreprocessingPipeline.jar=/home/user/HESML/HESML_Library/ImportedLibs/BioCPreprocessingPipeline.jar
file.reference.biolemmatizer-core-1.2.jar=/home/user/HESML/HESML_Library/ImportedLibs/biolemmatizer-core-1.2.jar
file.reference.context-2012.jar=/home/user/HESML/HESML_Library/ImportedLibs/context-2012.jar
file.reference.HESML-V2R1.0.1.jar=/home/user/HESML/HESML_Library/HESML/dist/HESML-V2R1.0.1.jar
file.reference.HESMLSTS-V2R1.0.1.jar=/home/user/HESML/HESML_Library/HESMLSTS/dist/HESMLSTS-V2R1.0.1.jar
file.reference.json-20180813.jar=/home/user/HESML/HESML_Library/ImportedLibs/json-20180813.jar
file.reference.json-simple-1.1.1.jar=/home/user/HESML/HESML_Library/ImportedLibs/json-simple-1.1.1.jar
file.reference.log4j-api-2.1.jar=/home/user/HESML/HESML_Library/ImportedLibs/log4j-api-2.1.jar
file.reference.log4j-core-2.1.jar=/home/user/HESML/HESML_Library/ImportedLibs/log4j-core-2.1.jar
file.reference.lvgdist-2020.0.jar=/home/user/HESML/HESML_Library/ImportedLibs/lvgdist-2020.0.jar
file.reference.mysql-connector-java-8.0.20.jar=/home/user/HESML/HESML_Library/ImportedLibs/mysql-connector-java-8.0.20.jar
file.reference.nlp-2.4.C.jar=/home/user/HESML/HESML_Library/ImportedLibs/nlp-2.4.C.jar
file.reference.opencsv-2.3.jar=/home/user/HESML/HESML_Library/ImportedLibs/opencsv-2.3.jar
file.reference.opennlp-maxent-3.0.3.jar=/home/user/HESML/HESML_Library/ImportedLibs/opennlp-maxent-3.0.3.jar
file.reference.opennlp-tools-1.5.3.jar=/home/user/HESML/HESML_Library/ImportedLibs/opennlp-tools-1.5.3.jar
file.reference.slib-dist-0.9-all-jar.jar=/home/user/HESML/HESML_Library/ImportedLibs/slib-dist-0.9-all-jar.jar
file.reference.stanford-corenlp-4.2.0.jar=/home/user/HESML/HESML_Library/ImportedLibs/stanford-corenlp-4.2.0.jar
includes=**
jar.compress=false
javac.classpath=\
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2 changes: 1 addition & 1 deletion HESML_Library/HESML_UMLSclient/nbproject/project.properties
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Expand Up @@ -33,7 +33,7 @@ dist.jar=${dist.dir}/HESML_UMLSclient.jar
dist.javadoc.dir=${dist.dir}/javadoc
endorsed.classpath=
excludes=
file.reference.HESML-V2R1.0.1.jar=../HESML/dist/HESML-V2R1.0.1.jar
file.reference.HESML-V2R1.0.1.jar=/home/user/HESML/HESML_Library/HESML/dist/HESML-V2R1.0.1.jar
includes=**
jar.compress=false
javac.classpath=\
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