🐛 Changed AncestralStateLogger to AncestralSequenceLogger in beast_te…

…mplate.xml; bumped version number
jjmccollum · Mar 12, 2024 · cb8067e · cb8067e
1 parent 9be3c51
commit cb8067e
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "teiphy"
-version = "0.1.9"
+version = "0.1.10"
 description = "Converts TEI XML collations to NEXUS and other formats"
 authors = ["Joey McCollum and Robert Turnbull"]
 license = "MIT"

diff --git a/teiphy/templates/beast_template.xml b/teiphy/templates/beast_template.xml
@@ -292,10 +292,10 @@
             <log spec="TreeWithMetaDataLogger" id="treeWithMetaDataLogger" branchratemodel="@clock" tree="@tree"/>
         </logger>
         <operatorschedule spec="OperatorSchedule" id="operatorSchedule"/>
-        <logger id="ancestralStateLogger" fileName="$(tree).ancestral.trees" logEvery="10000" mode="tree">
+        <logger id="ancestralSequenceLogger" fileName="$(tree).ancestral.trees" logEvery="10000" mode="tree">
             <!-- Start character ancestral state loggers -->
             {%- for vu in variation_units %}
-            <log spec="beastlabs.evolution.likelihood.AncestralStateLogger" id="morphTreeLikelihood.character.{{ loop.index }}.anclogger" data="@filter.{{ loop.index }}" taxonset="@taxa" siteModel="@morphSiteModel.{{ loop.index }}" branchRateModel="@clock" tree="@tree" useAmbiguities="true" useTipLikelihoods="true"/>
+            <log spec="beastclassic.evolution.likelihood.AncestralSequenceLogger" id="morphTreeLikelihood.character.{{ loop.index }}.anclogger" tag="morphTreeLikelihood.character.{{ loop.index }}" data="@filter.{{ loop.index }}" siteModel="@morphSiteModel.{{ loop.index }}" branchRateModel="@clock" tree="@tree" useAmbiguities="true" useTipLikelihoods="true"/>
             {%- endfor %}
         </logger>
     </run>