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researcher, entrepreneur, engineer
researcher, entrepreneur, engineer


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  1. broadinstitute/celligner2 broadinstitute/celligner2 Public

    A new version of the celligner package using VAEs. Inspired from the Theis lab's scArches.

    Jupyter Notebook 4

  2. broadinstitute/depmap_omics broadinstitute/depmap_omics Public

    What you need to process the Quarterly DepMap-Omics releases from Terra

    HTML 103 22

  3. broadinstitute/genepy broadinstitute/genepy Public

    Forked from jkobject/genepy

    Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python

    Python 18 5

  4. AMLproject AMLproject Public

    We are working on the AML pedDep project with DFCi & the BroadInsitute, looking at CRCs and their relation to genomic dependencies

    HTML 1

  5. flatironinstitute/CaImAn flatironinstitute/CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 613 362

  6. scDataLoader scDataLoader Public

    a dataloader to work with large single cell datasets from lamindb

    Jupyter Notebook 8