Skip to content

jleluyer/sibship_SNPpanel

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

5 Commits
 
 
 
 
 
 
 
 
 
 

Repository files navigation

sibship_SNPpanel

A sibship reconstruction from SNP panel genotyping using Sequoia R package

Warning

The software is provided "as is", without warranty of any kind, express or implied, including but not limited to the warranties of merchantability, fitness for a particular purpose and noninfringement. In no event shall the authors or copyright holders be liable for any claim, damages or other liability, whether in an action of contract, tort or otherwise, arising from, out of or in connection with the software or the use or other dealings in the software.

Make vcf

qsub 00_scripts/01_makevcf_freebayes.sh

Recode vcf

qsub 00_scripts/02_vcf2plink.sh

qsub 00_scripts/03_plinkrecode.sh

Reconstruct sibship

Rscript --vanilla 00_scripts/04_sibship_reconstruction.R

Dependencies

Freebayes

Plink

Sequoia R package

VCFtools

About

Sibship reconstruction from SNP panel genotyping

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published