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Minor python issues resolved #94

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Minor python issues resolved #94

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c5205cb
resolved deprecation warning
Sep 7, 2022
bca1ff9
resolve TypeError for java Strings
Sep 7, 2022
d8d16cf
Removing changes to python example1
jlizier Sep 8, 2022
dca33da
restore deleted example code
Sep 10, 2022
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4 changes: 2 additions & 2 deletions demos/python/example1TeBinaryData.py
100755 → 100644
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Expand Up @@ -52,8 +52,8 @@
# Next, demonstrate how to do this with a numpy array
teCalc.initialise()
# Create the numpy arrays:
sourceNumpy = numpy.array(sourceArray, dtype=numpy.int)
destNumpy = numpy.array(destArray, dtype=numpy.int)
sourceNumpy = numpy.array(sourceArray, dtype=int)
destNumpy = numpy.array(destArray, dtype=int)
# The above can be passed straight through to JIDT in python 2:
# teCalc.addObservations(sourceNumpy, destNumpy)
# But you need to do this in python 3:
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3 changes: 2 additions & 1 deletion demos/python/example9TeKraskovAutoEmbedding.py
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Expand Up @@ -33,7 +33,8 @@
if (not(os.path.isfile(jarLocation))):
exit("infodynamics.jar not found (expected at " + os.path.abspath(jarLocation) + ") - are you running from demos/python?")
# Start the JVM (add the "-Xmx" option with say 1024M if you get crashes due to not enough memory space)
startJVM(getDefaultJVMPath(), "-ea", "-Djava.class.path=" + jarLocation)
# see: https://jpype.readthedocs.io/en/latest/api.html#jpype.startJVM and https://stackoverflow.com/questions/64841426/duckling-int-argument-must-be-a-string-a-bytes-like-object-or-a-number-not
startJVM(getDefaultJVMPath(), "-ea", "-Djava.class.path=" + jarLocation, convertStrings=True)

# Examine the heart-breath interaction that Schreiber originally looked at:
datafile = '../data/SFI-heartRate_breathVol_bloodOx.txt'
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