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GCSA2 v0.8
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@jltsiren jltsiren released this 01 Oct 18:46
· 94 commits to master since this release
v0.8
b652fc8

This is a performance update.

  • New encoding for the FM-index that makes it as fast as the FM-index in BWA.
  • Kmer comparison: report the size of the symmetric difference between two indexes, and optionally output the kmers specific to one of the indexes.
  • The LCP array file has now a proper header.
  • Due to changes in file formats, old indexes must be rebuilt.
  • Headers are now located under include/gcsa.
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