Estimating arboreality and the effects of forest structure on detection of tropical tree-dwelling mesomammals using arboreal camera traps

Juliana Masseloux, Quy Tan Le, Jessica Burr, and Brian D. Gerber

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Detection history for arboreal single-season single-species occupancy models can be loaded into R using
> load(det_hist_arb_SSOM)

det_hist_arb is a list containing arboreal detection histories for each (9) arboreal species

Model list for each species was fit in R using package 'RMark" then exported into program MARK for Bayesian analyses.

Detection history for semi-arboreal multi-scale occupancy models can be loaded into R using
> load(det_hist_arb_MSOM)

det_hist_MARK is a list containing arboreal and terrestrial detection histories for each (4) semi-arboreal species

Unstandardized site-level covariates may be loaded into R using
> load(unstandardized_covariates)

Covariates were standardized in the model preparation code after removing rows (sites) from the species detection histories with all NAs

Refer to 'Methods_workflow.pdf' for a more detailed summary of data and workflow.