The lcmsfishdata R package is a companion data package to LUMA and contains tables of processed LC-MS-based untargeted metabolomics data. Installing lcmsfishdata enables many reproducible examples of various LUMA functions and self-contained modules. The raw data files associated with these processed data tables are not available at this time.
You can install development version of lcmsfishdata from GitHub with the following:
# requires devtools to install
install.packages('devtools')
library(devtools)
# install from repository
install_github('USEPA/lcmsfishdata')
library(lcmsfishdata)The documentation within the LUMA R package contains multiple examples that utilize the tables in the lcmsfishdata R package. Vignettes are also available for testing typical LUMA workflows.
The source code for this repository is maintained at https://github.com/jmosl01/lcmsfishdata which is also mirrored at https://github.com/usepa/lcmsfishdata
This software/application was developed by the U.S. Environmental Protection Agency (USEPA). No warranty expressed or implied is made regarding the accuracy or utility of the system, nor shall the act of distribution constitute any such warranty. The USEPA has relinquished control of the information and no longer has responsibility to protect the integrity, confidentiality or availability of the information. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constiutite or imply their endorsement, recommendation or favoring by the USEPA. The USEPA seal and logo shall not be used in any manner to imply endorsement of any commercial product or activity by the USEPA or the United States Government.
lcmsfishdata by USEPA is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
