CytoKegg is a Cytoscape 3.4.0 app designed to import KEGG pathways to Cytoscape.
- Search and import KEGG pathways
- Find KEGG pathways present in a given network.
Download the latest release here.
To search and import a KEGG pathway to Cytoscape simply go to Apps > CytoKegg > Search Pathways. Once there, select the target organism, type a pathway title and the click search. After that, select the target pathway and click open.
Similarly, to find KEGG pathways in a given network, go to Apps > CytoKegg > Find Pathways in Network. Once there select the network, the field containing your identifiers, the identifier type and click search.
Supported identifiers : uniprot, ncbi-proteinid, ncbi-geneid.
If you want to help and add a new feature, just create a new pull request to merge in the cytoscape_3.4.0 branch.