Better overview being built at https://janniklasrunge.de/portfolio.html
Putting together some examples of on the one hand still private work-in-progress projects and personal learning projects to share what I am working on.
Here I am publicly working on my most recent project at the University of Strasbourg.
In this Quarto / RMarkdown document I am playing around with random forest classification in a data set I make up on the fly: randomforest.html or randomforest.pdf
I am currently putting this project out of its organically grown state into a more accessible situation for future work of others and here I am sharing part of semi-automated pipelines that take raw sequencing data from well-covered samples, generate ancestral genotypes (F0 genotyping), and then use ultra-low-coverage reads from various sequencing runs, put them all together, and impute genotypes using the ancestral genotypes (not yet fully included): (Fx genotyping)