This workflow performs a phylogenetic study of the CHASE domain, a protein domain resposible for cytokinin reception in the two-component system in late diverging plants. It is a reimplementation of a paper by Pils and Heyl 2009.
A detailed description can be found on the Cuneiform website. This cookbook installs all necessary tools, downloads all necessary data, sets up Cuneiform, and places the workflow in a predetermined location. The cookbook can be run on any system in a virtual machine. For running the cookbook natively, an Ubuntu 16.04 or higher is required.
If you set up the workflow via kitchen converge
, log into the machine by typing
kitchen login
Execute the workflow script by entering
cuneiform -d /opt/data /opt/wf/phylogeny.cfl
- Jörgen Brandt (@joergen7) joergen@cuneiform-lang.org