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Issues list

Merging sequencing runs containing different studies using merge_phyloseq?
#1763 opened Jun 29, 2024 by punnettsun
Taxa names coming up as random words
#1762 opened Jun 26, 2024 by backwards-charm
7
technical question using ordinate phyloseq function with envfit of vegan Package
#1761 opened Jun 26, 2024 by cabraham03
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘tax_table’ for signature ‘"list"or"matrix"
#1760 opened Jun 26, 2024 by npj06
webR support
#1759 opened Jun 21, 2024 by isbool
plot_tree and taxonomy
#1758 opened Jun 15, 2024 by antoine4ucsd
Abundance Plot Help
#1757 opened Jun 12, 2024 by goodguynickpt
Heatmap color fade
#1756 opened Jun 12, 2024 by goodguynickpt
Subtracting taxa from a phyloseq object
#1755 opened May 30, 2024 by GinaGizzi
Taxa abundance with plot_bar - Can the color squares in the key be reduced in size?
#1754 opened May 30, 2024 by atozga
rarefy_even_depth() Error en rep_len(x["OTUi"], x["times"]): valor de 'length.out' no válido
#1753 opened May 27, 2024 by imonteroo
Error : invalid class “phyloseq” object: Component taxa/OTU names do not match.
#1752 opened May 24, 2024 by Saesha5
Plot_Networt by Phyloseq Object
#1751 opened May 21, 2024 by Motteran
Remove mitochondrial and chloroplastic taxons from my phyloseq object
#1750 opened May 14, 2024 by pailloufat-stack
Error when using hellinger transformation with ordinate and PCoA
#1749 opened May 7, 2024 by timz0605
Extremely wide variation of alpha diversity estimates among different studies
#1747 opened Apr 24, 2024 by migfejo
Missing reads creating phyloseq object after dada2 pipeline
#1746 opened Apr 22, 2024 by GingerMATE
1
Run the Wilcoxon test for each of the taxa ranks
#1745 opened Apr 19, 2024 by mailasb
merge_phyloseq fails if sample data contains only one column
#1744 opened Apr 18, 2024 by ying14
2
Creating a relative abundance bar plot by body site
#1741 opened Apr 10, 2024 by bark9299
MicroViz error Error in (function (cond) : error in evaluating the argument 'object' in selecting a method for function 'otu_table': Can't find column OTU_ID in .data.
#1740 opened Mar 26, 2024 by Jesuk555
1
Difference in relative abundance between MicrobiomeDB and r phyloseq
#1739 opened Mar 24, 2024 by kbenmd
How to decrease x axis size of rarefaction curve
#1738 opened Mar 24, 2024 by Avtober
1
Very High Log2FoldChanges
#1737 opened Mar 21, 2024 by TamarSmulders
2
Facet Taxa axis in Phyloseq heatmap
#1735 opened Mar 11, 2024 by jrb772
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