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Issues list

how to find ASVs present in different "sites"
#1657 opened Jan 27, 2023 by callmcgovern
Aggregate_taxa
#1656 opened Jan 26, 2023 by mariamaseng
2
Help !! plot_heatmap in R (Phyloseq) weird error
#1655 opened Jan 26, 2023 by LeeJH5120
3
parallelizing script for R cluster-Error- Function cannot find "tax_glom"
#1653 opened Jan 13, 2023 by pulidofabs
I can't get the coefficients of the taxa that contribute to the groups differences!
#1652 opened Jan 4, 2023 by Srvcl
Differences in number of taxa after subset_samples and prune_taxa
#1651 opened Jan 1, 2023 by Alonso-Garcia
Difference between vegan::capscale and ordinate::(method = "CAP")?
#1649 opened Dec 27, 2022 by carmennns2
subset_taxa doesn't extract the taxa of my interest
#1648 opened Dec 23, 2022 by mghotbi
Trying to merge_phyloseq but problem with trees
#1647 opened Dec 15, 2022 by xaalii
command to merge a otu_table and tax_table
#1645 opened Dec 7, 2022 by Robvh-git
1
How to draw mean value and errorbar using the phyloseq package?
#1644 opened Dec 4, 2022 by EnvrionmentalEngineer
rarefy_even depth question
#1642 opened Nov 25, 2022 by LaFra7
1
otu_table not working with vegan rarecurve
#1641 opened Nov 22, 2022 by ire1990
5
lines on barplot
#1640 opened Nov 17, 2022 by metageno67
2
Possible Feature? estimate_presence?
#1639 opened Nov 17, 2022 by mawa86
5
Does anybody work with Reduced Representation Sequencing/GBS data for metagenomic analysis? I have problems creating taxonomic data.
#1638 opened Nov 17, 2022 by Pablo-UY
plot_tree() queries
#1637 opened Nov 15, 2022 by marwa38
2
tax_glom then psmelt centered-log-ratio transformed data?
#1636 opened Nov 14, 2022 by gabrielet
1
adding a phy_tree to phyloseq object removes otu_table and tax_table info
#1635 opened Nov 13, 2022 by laura-brettell
Question about rarefy_even_depth
#1634 opened Nov 4, 2022 by LaFra7
adding phy_tree reduces number of ASVs
#1632 opened Nov 3, 2022 by MCK-sketch
Combine different markers and have a unique phyloseq object
#1631 opened Oct 27, 2022 by LaFra7
phyloseq-sample data zero dimensions
#1629 opened Oct 22, 2022 by Gigiagio
Merging metadata with otu table in a phyloseq object
#1628 opened Oct 18, 2022 by lynneitelson
1
Custom x axis labels with plot_bar
#1627 opened Oct 10, 2022 by aravenscraft
1
ProTip! no:milestone will show everything without a milestone.