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458 Open 821 Closed
458 Open 821 Closed
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Creating distance matrix of subsetted taxa
#1402 opened Oct 27, 2020 by wlwhalley
Trying to combine 3 replicate samples with merge_samples
#1401 opened Oct 16, 2020 by lgulmann
phyloseq - finding the percentage of an ASV/OTU in a phyloseq object
#1400 opened Oct 14, 2020 by DCrosbie1
tibble vs. data.frame problem in sample_data creation
#1399 opened Oct 12, 2020 by antagomir
Fill a Bar Plot with Taxonomic Grouping
#1398 opened Oct 9, 2020 by stevenbressan
Error with capscale and ordistep / ordiR2step
#1397 opened Oct 7, 2020 by markschl
subset_taxa not removing chloroplast taxa
#1394 opened Sep 26, 2020 by bioinfonext
plot_heatmap
#1393 opened Sep 25, 2020 by AliceBaniel
Remove ASV/OTU counts below % relative abundance per sample
#1391 opened Sep 18, 2020 by EisenRa
2
OMP error #15
#1390 opened Sep 18, 2020 by GianyA
2
mt() output with non-parametric F test
#1389 opened Sep 7, 2020 by hermetia
Find shared OTUs between two phyloseq objects?
#1387 opened Aug 23, 2020 by pavlo888
4
Combine ASV table with CD-Hit cluster list
#1386 opened Aug 21, 2020 by DanieleDeco
Filtering taxa based on relative abundance
#1385 opened Aug 16, 2020 by srisvs33
2
Is there a way to remove taxonomic roots from an already made phyloseq object?
#1384 opened Aug 12, 2020 by brandondurant
Get the taxonomic information of the genera with same name?
#1381 opened Aug 6, 2020 by BinhongLiu
dataframe construction and phyloseq object
#1378 opened Aug 5, 2020 by saifsikdar
How is Jaccard distance calculated in taxa-wise?
#1377 opened Aug 5, 2020 by MonicaSteffi
Different counts in phyloseq object vs data.frame + ggplot2
#1376 opened Aug 4, 2020 by bathyscapher
subset_samples() does not work if objects are not in the global env
#1374 opened Jul 31, 2020 by AliciaMstt
How to create a new tree
#1372 opened Jul 29, 2020 by coralzhang
Issue merge_phyloseq
#1371 opened Jul 29, 2020 by vanesotjim
2
physeqn <- phyloseq(otu_table(seq_tabn_nochim, taxa_are_rows=FALSE), sample_data(sample_name), tax_table(taxan_spec))
#1368 opened Jul 24, 2020 by Tr1sh
plot_ordination error
#1366 opened Jul 21, 2020 by DanCake3000
Generate taxa-wise unifrac Matrix
#1364 opened Jul 20, 2020 by MonicaSteffi
1
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