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There is still an issue with phyloseq and vegan compatibility.
I am trying to run beta diversity measures on data.
This is my code:
bray <- phyloseq::distance(physeq_object, method = "bray")
The error I get is:
Error in .C("veg_distance", x = as.double(x), nr = N, nc = ncol(x), d = double(N * :
"veg_distance" not available for .C() for package "vegan"
I have reinstalled phyloseq (by the source code, NOT Bioconductor because I read that the Bioconductor installed phyloseq has issues with dissimilarity measures) and reinstalled vegan.
My phyloseq version is 1.22.3 and my vegan version is 2.5.2.
My R version is 3.4.3.
What is going wrong?
The text was updated successfully, but these errors were encountered:
There is still an issue with phyloseq and vegan compatibility.
I am trying to run beta diversity measures on data.
This is my code:
bray <- phyloseq::distance(physeq_object, method = "bray")
The error I get is:
Error in .C("veg_distance", x = as.double(x), nr = N, nc = ncol(x), d = double(N * :
"veg_distance" not available for .C() for package "vegan"
I have reinstalled phyloseq (by the source code, NOT Bioconductor because I read that the Bioconductor installed phyloseq has issues with dissimilarity measures) and reinstalled vegan.
My phyloseq version is 1.22.3 and my vegan version is 2.5.2.
My R version is 3.4.3.
What is going wrong?
The text was updated successfully, but these errors were encountered: