initial commit

.gitignore

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+# Modified from https://www.toptal.com/developers/gitignore/api/python,vim,pycharm
+
+### PyCharm ###
+# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider
+# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
+
+# PyCharm
+.idea
+
+# CMake
+cmake-build-*/
+
+# File-based project format
+*.iws
+
+# IntelliJ
+out/
+
+# mpeltonen/sbt-idea plugin
+.idea_modules/
+
+# JIRA plugin
+atlassian-ide-plugin.xml
+
+# Crashlytics plugin (for Android Studio and IntelliJ)
+com_crashlytics_export_strings.xml
+crashlytics.properties
+crashlytics-build.properties
+fabric.properties
+
+### Python ###
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+### Vim ###
+# Swap
+[._]*.s[a-v][a-z]
+!*.svg  # comment out if you don't need vector files
+[._]*.sw[a-p]
+[._]s[a-rt-v][a-z]
+[._]ss[a-gi-z]
+[._]sw[a-p]
+
+# Session
+Session.vim
+Sessionx.vim
+
+# Temporary
+.netrwhist
+*~
+# Auto-generated tag files
+tags
+# Persistent undo
+[._]*.un~
+
+# End of https://www.toptal.com/developers/gitignore/api/python,vim,pycharm
+
+# additional pycharm
+*.pycharm_helpers
+
+# additional Environments
+.env_* 
+
+# johann-specific
+johann*.log
+johann*.log.*
+johann*.pid
+johann/celeryd.pid
+johann/plugins
+johann/requirements_base.txt
+johann/requirements_plugins.txt
+johann/run_conductor_pmtr*
+!johann/run_conductor_pmtr.default.sh
+!johann/run_conductor_pmtr.dev.sh
+johann/run_player_pmtr*
+!johann/run_player_pmtr.default.sh
+!johann/run_player_pmtr.dev.sh
+*.creds
+*.hosts.y*ml

.gitlab-ci.yml

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+# Copyright (c) 2019-present, The Johann Authors. All Rights Reserved.
+# Use of this source code is governed by a BSD-3-clause license that can
+# be found in the LICENSE file. See the AUTHORS file for names of contributors.
+
+default:
+  image: python:3.6
+  tags:
+    - docker
+  before_script:
+    - python3 -V
+    - make dev-setup
+    - source ./venv/bin/activate
+
+variables:
+  PIP_CACHE_DIR: "${CI_PROJECT_DIR}/.cache/pip"
+  PRE_COMMIT_HOME: "${CI_PROJECT_DIR}/.cache/pre-commit"
+  PYTHONPATH: "${CI_PROJECT_DIR}"
+
+stages:
+  - lint
+  - test
+
+.lint:
+  stage: lint
+  allow_failure: true
+
+lint:
+  extends: .lint
+  script: make lint
+  cache:
+    key: "${CI_JOB_NAME}"
+    paths:
+      - .cache/pip
+      - .cache/pre-commit
+      - venv/
+
+safety:
+  extends: .lint
+  script: make safety
+  cache:
+    key: "${CI_JOB_NAME}"
+    paths:
+      - .cache/pip
+      - venv/
+
+.docker:
+  variables:
+    JOHANN_CORE_ROOT: .
+    # https://docs.gitlab.com/ee/ci/docker/using_docker_build.html#tls-enabled
+    DOCKER_TLS_CERTDIR: "/certs"
+  image: tiangolo/docker-with-compose
+  services:
+    - docker:19.03.12-dind
+  before_script:
+    - docker info
+    - apk add bash
+
+test:
+  stage: test
+  extends: .docker
+  script: make test
+
+clean:
+  stage: .post
+  when: always
+  extends: .docker
+  script: make clean

.pre-commit-config.yaml

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+# Copyright (c) 2019-present, The Johann Authors. All Rights Reserved.
+# Use of this source code is governed by a BSD-3-clause license that can
+# be found in the LICENSE file. See the AUTHORS file for names of contributors.
+exclude: "docs|.git|.tox"
+default_stages: [commit]
+default_language_version:
+  python: python3.6
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: master
+    hooks:
+      - id: check-byte-order-marker
+      - id: check-executables-have-shebangs
+      - id: trailing-whitespace
+      - id: check-merge-conflict
+      - id: check-docstring-first
+      - id: check-added-large-files
+      - id: name-tests-test
+      - id: check-json
+      - id: check-yaml
+        exclude: tests/scores/malformed
+
+  - repo: https://github.com/timothycrosley/isort
+    rev: 5.0.2
+    hooks:
+      - id: isort
+
+  - repo: https://github.com/psf/black
+    #rev: stable
+    rev: cc2facaac69a8ffa4486e6fe498842debb17ce12
+    hooks:
+      - id: black
+
+  - repo: https://github.com/prettier/prettier
+    rev: 2.0.5
+    hooks:
+      - id: prettier
+        args: [--prose-wrap=always, --print-width=88]
+        exclude: tests/scores/malformed
+
+  - repo: https://gitlab.com/pycqa/flake8
+    rev: 3.8.3
+    hooks:
+      - id: flake8
+        args: [--config=setup.cfg]
+        additional_dependencies: [flake8-bugbear]
+
+  - repo: https://github.com/jazzband/pip-tools
+    rev: 5.2.1
+    hooks:
+      - id: pip-compile
+        args: [--quiet, --generate-hashes, --no-emit-index-url]
+      - id: pip-compile
+        name: pip-compile-dev
+        args:
+          [
+            --quiet,
+            --allow-unsafe,
+            --generate-hashes,
+            --no-emit-index-url,
+            --output-file=requirements-dev.txt,
+            requirements-dev.in,
+          ]
+        files: ^requirements(-dev)?\.(in|txt)$
+
+  - repo: https://github.com/PyCQA/bandit
+    rev: 1.6.2
+    hooks:
+      - id: bandit
+        entry: bandit -lll
+        exclude: tests

AUTHORS

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+# This is the list of Johann authors for copyright purposes.
+
+# This does not necessarily list everyone who has contributed code; in
+# some cases, their employer may be the copyright holder.
+
+# Names should be added to this file as:
+# Name or Organization <email address>
+# The email address is not required for organizations.
+
+The Johns Hopkins University / Applied Physics Laboratory LLC
+
+

LICENSE

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+BSD 3-Clause License
+
+Copyright (c) 2019-present, The Johann Authors.
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.