A utility for extracting terms from the RadLex OWL file for the TFS RadLex database. To use this program, get the RadLex OWL file from the bioontology site for RadLex:
http://bioportal.bioontology.org/ontologies/RADLEX
Note: there are so many entities in the OWL file that the SAX parser hits the 64K default limit. As a convenience, the program internally expands the limit to 256000 to get around the problem. This is the equivalent of running the program from the command line with this command:
java -Djdk.xml.entityExpansionLimit=256000 -jar RadLexXML.jar
If the OWL file grows over time to exceed the limit built into the program, you will have to change the first line in the initComponents method in RadLexXML.java to specify a new limit. Alternatively, you can remove that line and always run the program from the command line, specifying whatever limit you require.