Issue with Enzyme and Composition Options (0/1/2)

[publicfunctionsufiyan]

I'm facing an issue with the deBruijn.jar tool. When using the command java -jar deBruijn.jar --input filename.fasta --output output.fasta --enzyme 0, I receive the error: "Wrong value. Option enzyme requires a value of the format: Integer: 0/1/2". The same problem occurs with the --composition option.

The documentation specifies that these options should accept 0/1/2: [--enzyme 0/1/2] (0=non specific, 1=trypsin (default), 2=chymotrypsin).

Any assistance on resolving this would be appreciated.

Thank you
Sufiyan

[patrick-willems]

Same error here, no fix?

[johramoosa]

I will check and get back to you. Thanks for reporting the issue. Regards, Johra

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On Wed, Oct 18, 2023 at 4:24 AM patrick-willems ***@***.***> wrote: Same error here, no fix? — Reply to this email directly, view it on GitHub <#1 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AFMCP72V4RAFSGHZMBJIZETX76G2DAVCNFSM6AAAAAA4F62Y2KVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTONRXHE2DAMBXGY> . You are receiving this because you are subscribed to this thread.Message ID: <johramoosa/deBruijn/issues/1/1767940076 ***@***.***>

[johramoosa]

I will get back to you. Thanks for reporting the problem. Regards, Johra

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On Thu, Aug 31, 2023 at 8:06 AM Muhammad Sufiyan ***@***.***> wrote: I'm facing an issue with the deBruijn.jar tool. When using the command java -jar deBruijn.jar --input filename.fasta --output output.fasta --enzyme 0, I receive the error: "Wrong value. Option enzyme requires a value of the format: Integer: 0/1/2". The same problem occurs with the --composition option. The documentation specifies that these options should accept 0/1/2: [--enzyme 0/1/2] (0=non specific, 1=trypsin (default), 2=chymotrypsin). Any assistance on resolving this would be appreciated. Thank you Sufiyan — Reply to this email directly, view it on GitHub <#1>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AFMCP77U23YQHHPZ3HWHCQDXYB43HANCNFSM6AAAAAA4F62Y2I> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[johramoosa]

Hello, Thanks again for reporting the issue. It should work now. Let me know if you face any more issues. Thanks, Johra

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On Wed, Oct 18, 2023 at 10:31 AM johra moosa ***@***.***> wrote: I will get back to you. Thanks for reporting the problem. Regards, Johra On Thu, Aug 31, 2023 at 8:06 AM Muhammad Sufiyan ***@***.***> wrote: > I'm facing an issue with the deBruijn.jar tool. When using the command > java -jar deBruijn.jar --input filename.fasta --output output.fasta > --enzyme 0, I receive the error: "Wrong value. Option enzyme requires a > value of the format: Integer: 0/1/2". The same problem occurs with the > --composition option. > > The documentation specifies that these options should accept 0/1/2: > [--enzyme 0/1/2] (0=non specific, 1=trypsin (default), 2=chymotrypsin). > > Any assistance on resolving this would be appreciated. > > Thank you > Sufiyan > > — > Reply to this email directly, view it on GitHub > <#1>, or unsubscribe > <https://github.com/notifications/unsubscribe-auth/AFMCP77U23YQHHPZ3HWHCQDXYB43HANCNFSM6AAAAAA4F62Y2I> > . > You are receiving this because you are subscribed to this thread.Message > ID: ***@***.***> >