Releases: jonas-fuchs/BAMdash
Releases · jonas-fuchs/BAMdash
v.0.2.4
v.0.2.3
FIXES:
Small fix for the mean coverage calculation. Previously calculations were wrong if regions fell under the coverage cutoff due to how the df was subset.
v.0.2.2
NEW
added -q
argument that allows a custom bam quality threshold (prior the threshold was 15)
FIXES
fixed the -v
argument
v.0.2.1
NEW
- added assessment if mutation could have been caused by APOBEC
FIXED
- fix crash if bed file had no strand information
v.0.2
NEW
- full SNP and INDEL annotation if they lie in a CDS
- bin size for coverage plot
v.0.1.2
FIXES
- fixed a bug that did not plot the track if no vcf and gb were provided
- moved requirement locations
v.0.1.1
v.0.1 HOTFIX
FIXES
vcf annotation:
- correct point mutation types
- now looks for multiple cds identifying tags for vcf annotation
- correct amino acid
visual:
- small visual bug fix for vcf track
v.0.1
Happy for this first alpha version of BAMdash. Included quite a lot of stuff:
- interactive coverage plots
- interactive track plots
- additional hover information
- stat calculation from coverage data
- vcf annotation from gb files
- buttons for coverage y axis
- dark mode mode
- annotated track information to files