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Releases: jonas-fuchs/BAMdash

v.0.2.4

11 Mar 10:29
e8a9ef1
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FIXES:

Fixed a bug where the ABOBEC activity prediction would fail if the variant is located at the genome end

v.0.2.3

18 Dec 10:05
09bf627
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FIXES:
Small fix for the mean coverage calculation. Previously calculations were wrong if regions fell under the coverage cutoff due to how the df was subset.

v.0.2.2

01 Dec 11:53
a5def92
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NEW
added -q argument that allows a custom bam quality threshold (prior the threshold was 15)

FIXES
fixed the -v argument

v.0.2.1

03 Nov 15:03
ed3a24d
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NEW

  • added assessment if mutation could have been caused by APOBEC

FIXED

  • fix crash if bed file had no strand information

v.0.2

22 Oct 16:40
b03e2c4
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NEW

  • full SNP and INDEL annotation if they lie in a CDS
  • bin size for coverage plot

v.0.1.2

12 Oct 10:29
79087c9
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FIXES

  • fixed a bug that did not plot the track if no vcf and gb were provided
  • moved requirement locations

v.0.1.1

09 Oct 08:52
947d51c
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v.0.1 HOTFIX

FIXES

vcf annotation:

  • correct point mutation types
  • now looks for multiple cds identifying tags for vcf annotation
  • correct amino acid

visual:

  • small visual bug fix for vcf track

v.0.1

08 Oct 21:39
b9cc0b8
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Happy for this first alpha version of BAMdash. Included quite a lot of stuff:

  • interactive coverage plots
  • interactive track plots
  • additional hover information
  • stat calculation from coverage data
  • vcf annotation from gb files
  • buttons for coverage y axis
  • dark mode mode
  • annotated track information to files