Popular repositories

1. oral-microbiome-omics-review oral-microbiome-omics-review Public

   This repository contains a preprint of my review on omics and bioinformatics technologies in the context of oral microbiome research

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2. B04Sm5_genome_completion B04Sm5_genome_completion Public

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   Completing and closing the genome of Streptococcus mutans strain B04Sm5 using composite long and short-read sequencing.

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3. Oral_Microbiome_Chapter Oral_Microbiome_Chapter Public

   Forked from jaybake5/Oral_Microbiome_Chapter

   Scripts used in the "Identification of bacterial biosynthetic gene clusters associated with caries" Chapter of Oral Microbiome volume of Methods in Molecular Biology

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4. JB001_genome_completion JB001_genome_completion Public

   Scripts, parameters, and versions of the software tools used to complete the genome of JB001.

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5. Smutans-pangenome Smutans-pangenome Public

   Repository containing the pangenome of Streptococcus mutans created by Jonathon L Baker using Anvi'o.

6. nanopore-oral-genomes nanopore-oral-genomes Public

   This repository contains supplemental data files for the publication "Using nanopore sequencing to obtain complete genomes from saliva samples"