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[MRG] Add functions to modify and visualize connectivity #318

Merged
merged 33 commits into from May 19, 2021
Merged

[MRG] Add functions to modify and visualize connectivity #318

merged 33 commits into from May 19, 2021

Commits on May 18, 2021

  1. Add ability to probabilistically remove connections

    @ntolley
    ntolley committed May 18, 2021
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  2. Update tests

    @ntolley
    ntolley committed May 18, 2021
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  3. Update example with new method

    @ntolley
    ntolley committed May 18, 2021
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  4. doc update

    @ntolley
    ntolley committed May 18, 2021
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  5. Rename update_probability to drop

    @ntolley
    ntolley committed May 18, 2021
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  6. Merge conflict

    @ntolley
    ntolley committed May 18, 2021
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  7. Add basic connectivity matrix plotting

    @ntolley
    ntolley committed May 18, 2021
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  8. Update hnn_core/network.py 

    Co-authored-by: Mainak Jas <jasmainak@users.noreply.github.com>
    @ntolley @jasmainak
    ntolley and jasmainak committed May 18, 2021
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  9. Flake8

    @ntolley
    ntolley committed May 18, 2021
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  10. Convert conn.drop() to net.connection_probability

    @ntolley
    ntolley committed May 18, 2021
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  11. Create default_network function

    @ntolley
    ntolley committed May 18, 2021
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  12. Fix a bunch of tests :)

    @ntolley
    ntolley committed May 18, 2021
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  13. And every example too!

    @ntolley
    ntolley committed May 18, 2021
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  14. Fixture fix

    @ntolley
    ntolley committed May 18, 2021
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  15. Minor improvements

    @ntolley
    ntolley committed May 18, 2021
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  16. Update connectivity example

    @ntolley
    ntolley committed May 18, 2021
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  17. Update example text

    @ntolley
    ntolley committed May 18, 2021
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  18. Flake8

    @ntolley
    ntolley committed May 18, 2021
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  19. Update docstring

    @ntolley
    ntolley committed May 18, 2021
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  20. Update api.rst

    @ntolley
    ntolley committed May 18, 2021
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  21. More verbose axis labels for connectivity matrix

    @ntolley
    ntolley committed May 18, 2021
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  22. Improve example descriptions and fix connectivity pattern

    @ntolley
    ntolley committed May 18, 2021
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  23. Move displaced comment relevant for connectivity

    @ntolley
    ntolley committed May 18, 2021
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  24. Add seeding for probabilistic connections

    @ntolley
    ntolley committed May 18, 2021
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  25. DOC: minor fix

    @ntolley
    ntolley committed May 18, 2021
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  26. DOC: Fix incorrect statement about copying

    @ntolley
    ntolley committed May 18, 2021
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  27. DOC: Address @cjayb comment on instantiating empty networks

    @ntolley
    ntolley committed May 18, 2021
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  28. Add methods to clear cell-cell connections and drives separately

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    ntolley committed May 18, 2021
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  29. Flake8

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    ntolley committed May 18, 2021
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Commits on May 19, 2021

  1. Apply suggestions from code review 

    Co-authored-by: Mainak Jas <jasmainak@users.noreply.github.com>
    @ntolley @jasmainak
    ntolley and jasmainak committed May 19, 2021
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  2. Move connection probability method to function

    @ntolley
    ntolley committed May 19, 2021
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  3. Add line for example plots

    @ntolley
    ntolley committed May 19, 2021
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  4. DOC: Update whats_new.rst

    @ntolley
    ntolley committed May 19, 2021
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