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WIP: hnn-core compatibility #331

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WIP: hnn-core compatibility #331

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16 changes: 9 additions & 7 deletions hnn/qt_thread.py
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Original file line number Diff line number Diff line change
Expand Up @@ -94,20 +94,22 @@ def simulate(net):

sim_data = {}
# run the simulation with MPIBackend for faster completion time
record_vsoma = bool(net.params['record_vsoma'])
record_vsoma = bool(net._params['record_vsoma'])

numspikes_params = net.params['numspikes_*']
numspikes_params = net._params['numspikes_*']
# optimization can feed in floats for numspikes
for param_name, spikes in numspikes_params.items():
net.params[param_name] = round(spikes)
net._params[param_name] = round(spikes)

sim_data['raw_dpls'] = simulate_dipole(net, net.params['N_trials'],
sim_data['raw_dpls'] = simulate_dipole(net,
n_trials=net._params['N_trials'],
postproc=False,
record_vsoma=record_vsoma)
record_vsoma=record_vsoma,
tstop=net._params['tstop'])

# hnn-core changes this to bool, change back to int
if isinstance(net.params['record_vsoma'], bool):
net.params['record_vsoma'] = int(record_vsoma)
if isinstance(net._params['record_vsoma'], bool):
net._params['record_vsoma'] = int(record_vsoma)
sim_data['gid_ranges'] = net.gid_ranges
sim_data['spikes'] = net.cell_response
sim_data['vsoma'] = net.cell_response.vsoma
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