Added mpm_median to accompany mat_median #139
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| # This workflow builds the site, renders the codemeta data, and | |
| # then does a build check with R-CMD-check | |
| # Name (appears on badge, keep it short) | |
| name: R-CMD-check | |
| # When to run | |
| on: | |
| push: | |
| branches: | |
| - devel | |
| # Define job | |
| # What systems to run on (the matrix) | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'oldrel'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: windows-latest, r: 'devel'} | |
| - {os: macOS-latest, r: 'oldrel'} | |
| - {os: macOS-latest, r: 'release'} | |
| #- {os: macOS-latest, r: 'devel'} | |
| - {os: ubuntu-20.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| # Set up the environment | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| #Steps of the jobs | |
| # What things to use to complete the job | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v1 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| #Add dependencies | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| #Windows | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| #System dependencies for linux | |
| - name: Install system dependencies for Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| #Add quartz for macOS only | |
| - name: Install XQuartz for macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| wget https://github.com/XQuartz/XQuartz/releases/download/XQuartz-2.7.11/XQuartz-2.7.11.dmg | |
| sudo hdiutil attach XQuartz-2.7.11.dmg | |
| sudo installer -package /Volumes/XQuartz-2.7.11/XQuartz.pkg -target / | |
| #R script to install rcmdcheck and Rage | |
| - name: Install dependencies, rcmdcheck, Rage | |
| run: | | |
| remotes::install_deps(dependencies = TRUE, force = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| remotes::install_github("jonesor/Rage") #in suggests | |
| shell: Rscript {0} | |
| #R script to build the site | |
| - name: Build the site (on macOS, and latest release R version) | |
| if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release' | |
| run: | | |
| install.packages("textshaping",type = "binary",dependencies = TRUE) | |
| install.packages("devtools") | |
| devtools::install(pkg = ".", dependencies = TRUE) | |
| install.packages("rmarkdown",dependencies = TRUE) | |
| rmarkdown::render(input = "README.Rmd","github_document",clean = TRUE) | |
| unlink("README.html") | |
| install.packages("pkgdown", dependencies = TRUE) | |
| pkgdown::build_site() | |
| install.packages("digest",dependencies = TRUE) | |
| # ## install.packages("codemetar", dependencies = TRUE) | |
| # ## codemetar::write_codemeta() | |
| shell: Rscript {0} | |
| #Commit changes to the codemeta, site and README. | |
| #Need only run on macOS-latest with release version of R | |
| - name: Commit results | |
| if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release' | |
| #if: "!contains(github.event.head_commit.message, 'cm-skip')" | |
| run: | | |
| git add codemeta.json | |
| git add docs/ | |
| git add README.md | |
| git commit -m 'Re-build site, codemeta.json and README' || echo "No changes to commit" | |
| git push https://${{github.actor}}:${{secrets.GITHUB_TOKEN}}@github.com/${{github.repository}}.git HEAD:${{ github.ref }} || echo "No changes to commit" | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| sessionInfo() | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| #run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--ignore-vignettes"), build_args = c("--no-build-vignettes"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |