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1. CIPHER CIPHER Public

   CIPHER is a program for the prediction of coding sequences, or open reading frames (ORFs) in transcripts. It is based on the differences in hexamer nucleotide frequencies in sets of coding and non-…

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2. riboseq_orfs_analyses riboseq_orfs_analyses Public

   This repository contains a series of scripts developed to obtain the main results of the manuscript "Origins, mechanisms, and implications of de novo gene and ORF birth in humans" and "Evolutionary…

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3. gencode-riboseqORFs gencode-riboseqORFs Public

   Python script to get an unified list of Ribo-Seq ORFs from a list of compiled ORF datasets.

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4. TransCons-tools TransCons-tools Public

   TransCons-tools is a series of Python scripts developed to reproduce the analyses performed in Ruiz-Orera et al. (https://doi.org/10.1101/348326)

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5. witte_et_al_2021 witte_et_al_2021 Public

   This folder contains the main scripts used to generate the main results in the article 'A trans locus causes a ribosomopathy in hypertrophic hearts that affects mRNA translation in a protein length…

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6. RuizOrera_etal_2024 RuizOrera_etal_2024 Public

   Set of scripts used to run the main analyses done for the manuscript X

   Python