subex.tbl issue

[maringos]

Hi,

I have found the following warning which appears after writing the draft and might be of importance:

Warning message:
In fread(paste0(script.dir, "/../dat/subex.tbl")) :
  Stopped early on line 371. Expected 5 fields but found 4. Consider fill=TRUE and comment.char=. First discarded non-empty line: <<Inulin	EX_inulin(e)	EX_cpd28763_e0	Carbohydrates>>

Best regards,
Yorgos

Test Output:

(gapseq-dev) [****@caucluster1 ~]$ $gapseq test

gapseq version: 1.2 3e2d9393
linux-gnu
#1 SMP Tue May 10 14:48:47 UTC 2022 


#######################
#Checking dependencies#
#######################
ldconfig (GNU libc) 2.28
libsbml.so.5 -> libsbml.so.5.18.0 libsbml.so.5 -> libsbml.so.5.18.0
libglpk.so.40 -> libglpk.so.40.3.0 libglpk.so.40 -> libglpk.so.40.3.1
GNU Awk 5.1.0, API: 3.0
sed (GNU sed) 4.8
grep (GNU grep) 3.4
This is perl 5, version 32, subversion 1 (v5.32.1) built for x86_64-linux-thread-multi
tblastn: 2.13.0+
exonerate from exonerate version 2.4.0
bedtools v2.30.0
barrnap 0.9 - rapid ribosomal RNA prediction
R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
git version 2.38.1
GNU parallel 20230122
HMMER 3.3.2 (Nov 2020); http://hmmer.org/
bc 1.07.1

Missing dependencies: 0


#####################
#Checking R packages#
#####################
data.table 1.14.6 
stringr 1.5.1 
sybil 2.2.1 
getopt 1.20.3 
doParallel 1.0.17 
foreach 1.5.2 
R.utils 2.12.3 
stringi 1.8.3 
glpkAPI 1.3.4 
BiocManager 1.30.19 
Biostrings 2.66.0 
jsonlite 1.8.4 
CHNOSZ 1.4.3 
httr 1.4.4 

Missing R packages:  0 


##############################
#Checking basic functionality#
##############################
Optimization test: OK 
Building full model: OK 
Blast test: OK

Passed tests: 3/3

[jotech]

should be solved by now, thank you!