- Improvement of reaction and metabolite database for archaeal metabolism (incl. methanogenesis, mevalonate pathways, chorismate biosynthesis)
- Anaerobic Degradation pathways for secondary plant metabolites (incl. daidzin, daidzein, quercetin, genistein, sulfoquinovose)
- New module for automated prediction of gapfill-/growth- medium
- Improved performance of SBML export
- gapseq version tags in main output files
- Improved prediction of reactions with multiple associated EC-numbers
- Revised reaction and metabolite database for C1-metabolism (i.e. Wood-Ljungdahl pathway)
- improved representation of nitrogen metabolism (e.g. ammonia oxidation)
- new bile acids pathways (deamination, 7dehydroxylation, epimerization)
- easier installation via conda libsbml package
- support to adjust for environmental conditions (low/high h2)
- enabled support for photosynthesis
- full model construction on the fly
- xylan degradation
- medium prediction
- improved threonine biosynthesis prediction
- updated reaction sequences (uniprot) and pathway databases (metacyc)
- revised transporter prediction
- extended nucleotide metabolism
- updated archaeal pathways