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AlignmentRecordLimitProjDS.scala
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AlignmentRecordLimitProjDS.scala
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package org.bdgenomics.adam.dataset
/**
* Created by jp on 4/13/16.
*/
case class AlignmentRecordLimitProjDS(readInFragment: java.lang.Integer,
contigName: String,
start: java.lang.Long,
oldPosition: java.lang.Long,
end: java.lang.Long,
mapq: java.lang.Integer,
readName: String,
sequence: String,
qual: String,
cigar: String,
oldCigar: String,
basesTrimmedFromStart: java.lang.Integer,
basesTrimmedFromEnd: java.lang.Integer,
readPaired: Boolean,
properPair: Boolean,
readMapped: Boolean,
mateMapped: Boolean,
failedVendorQualityChecks: Boolean,
var duplicateRead: Boolean,
readNegativeStrand: Boolean,
mateNegativeStrand: Boolean,
primaryAlignment: Boolean,
secondaryAlignment: Boolean,
supplementaryAlignment: Boolean,
mismatchingPositions: String,
recordGroupName: String,
recordGroupSample: String,
mateAlignmentStart: java.lang.Long,
mateAlignmentEnd: java.lang.Long,
mateContigName: String,
inferredInsertSize: java.lang.Long) extends Serializable