OlygosAnalyzer gathers quality analysis and vizualisation tools for DNA-like data generated from DNA data storage solutions.
This project has been developped by the Mediacoding group in the I3S laboratory (Euclide B, 2000 Rte des Lucioles, 06900 Sophia Antipolis, FRANCE), with fundings from CNRS and Université Côte d'Azur.
OligoAnalyzer is covered by two compatible BSD-style open source licenses. Refer to LICENSE.md for a roll-up of license terms.
I3S laboratory, Euclide B, 2000 Rte des Lucioles, 06900 Sophia Antipolis, FRANCE
xpic@i3s.unice.fr, dimopoulou@i3s.unice.fr, gilsanan@i3s.unice.fr, mateos@i3s.unice.fr, am@i3s.unice.fr
To install the repository, you need to have pip installed, then use the following command at the root of the folder:
pip install -r requirements.txt
or if you want to add the oligoanalyze package to your python path and use it from anywhere:
python setup.py install
To analyze the GC content of the generated fasta file,
jdna_gc $DATA.fasta
or
jdna_gc.exe $DATA.fasta
To analyze the homopolymers of the generated fasta file,
jdna_homopolymers $DATA.fasta
or
jdna_homopolymers.exe $DATA.fasta