Add progress bar to FOS script

jpiper · Jun 7, 2015 · e5bd52d · e5bd52d
1 parent dc0eb01
commit e5bd52d
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/pyDNase/scripts/dnase_fos_scorer.py b/pyDNase/scripts/dnase_fos_scorer.py
@@ -17,6 +17,7 @@
 
 import argparse
 import pyDNase
+from clint.textui import progress
 
 parser = argparse.ArgumentParser(description='writes a BED file with the FOS for the interval specified as the score')
 parser.add_argument("-A",action="store_true", help="ATAC-seq mode (default: False)",default=False)
@@ -29,6 +30,6 @@
 regions = pyDNase.GenomicIntervalSet(args.regions)
 
 outfile = open(args.output,"w")
-for i in regions:
+for i in progress.bar(regions):
     i.score = reads.FOS(i)
     print >> outfile, i