dnase_wig_tracks.py crushes - python3

[mcjmigdal]

Hi, apparently dnase_wig_tracks.py python3 version crushes. Python says the reason is that GenomicInterval objects canot be compared to each other. Indeed I can't find any internal method for such comaprison in pyDNase package. In package for python2 it works however but I can't figure where it's defined. Could you give me a hint on that?
Thx!

>>> import pyDNase
>>> regions = pyDNase.GenomicIntervalSet("some.bed")
Reading BED File...
[################################] 39169/39169 - 00:00:01
>>> for each in [item for sublist in sorted(regions.intervals.values()) for item in sorted(sublist, key=lambda peak: peak.startbp)]:
...     continue
...
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
TypeError: unorderable types: GenomicInterval() < GenomicInterval()

[jpiper]

Can you try upgrading (pip install -u pyDnase) and see if the error is still there?

[mcjmigdal]

Works! Nicely done thanks