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add Coral Reefs doi
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jrcunning committed Nov 9, 2017
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### Symbiont shuffling linked to differential photochemical dynamics of *Symbiodinium* in three Caribbean reef corals

by **Ross Cunning, Rachel N. Silverstein, and Andrew C. Baker**
by **Ross Cunning, Rachel N. Silverstein, and Andrew C. Baker**
in *Coral Reefs* (doi: [10.1007/s00338-017-1640-3](http://dx.doi.org/10.1007/s00338-017-1640-3))

In this manuscript, we describe changes in *Symbiodinium* community structure ('symbiont shuffling') in three corals during experimental thermal bleaching and recovery. We demonstrate that the magnitude of shuffling can be predicted by the relative difference in photochemical efficiency of co-occurring symbionts under stress, and the duration of thermal stress applied.

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* **analysis/:** Contains an R Markdown document (analysis.Rmd) with commented code to reproduce all data analysis and figures presented in the manuscript. Knitting this document produces the HTML output (analysis.html) and saves the R environment as an RData file (analysis.RData).

* **figures/:** Contains png files for each figure included in the manuscript. Code to generate these figures can be found in **analysis/analysis.Rmd**.
* **figures/:** Contains png files for each figure included in the manuscript. Code to generate these figures can be found in **analysis/analysis.Rmd**.

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