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sorted-r-blacklist
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sorted-r-blacklist
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# TODO: cap-mirseq has test error. Perhaps just needs a fix on expected exit
# code
recipes/cap-mirseq
# TODO: older limma packages should stay blacklisted until we can track down stable
# URLs for these versions.
recipes/bioconductor-limma/3.26.7
recipes/bioconductor-limma/3.28.6
recipes/bioconductor-limma/3.28.2
# TODO: r-ks has error related to rgl
recipes/r-ks
# TODO: r-hrdcde depends on r-ash which has unresolved issues, and on r-ks
# which has rgl issues
recipes/r-hdrcde
# TODO: r-rainbow depends on r-ash which has unresolved issues, and on r-ks
# which has rgl issues
recipes/r-rainbow
# TODO: r-mutoss has the same problem as r-phonr: it loops indefinitely on osx.
recipes/r-mutoss
# TODO: older s4vectors should stay blacklisted until we can track down stable
# version for 0.8.7
recipes/bioconductor-s4vectors/0.8.7
# TODO: older versions o bioconductor-iranges need stable URLS
recipes/bioconductor-iranges/2.4.7
recipes/bioconductor-iranges/2.4.6
recipes/bioconductor-summarizedexperiment/1.0.2
recipes/bioconductor-deseq2/1.10.1
recipes/bioconductor-genelendatabase/1.6.0
# TODO: bioconductor-qdnaseq depends on bioconductor-dnacopy which has some
# gfortran issues
# recipes/bioconductor-qdnaseq
# TODO: no url for DEXSeq 1.16. bioarchive has 1.21.0, but the latest available
# on bioconductor site v3.4 is 1.20. Need to resolve version issues.
# Doing: update to 1.20.1 according to bioconductor site v3.4
# the above version conflicts to be resolved later.
# recipes/bioconductor-dexseq
# depends on r-rainbow, which has r-rgl issues
recipes/bioconductor-bubbletree
# DEPRECATE: r-knitr exists in main R channel
recipes/r-knitr
# TODO: When building, complains that:
# Error : object ‘assay’ is not exported by 'namespace:GenomicRanges'
# ERROR: lazy loading failed for package ‘SARTools’
#
# Maybe it needs an earlier version of bioconductor-genomicranges?
recipes/r-sartools/1.2.0
# DEPRECATE: r-readr exists in main R channel
recipes/r-readr
# TODO: bioconductor-cexor needs specific version of genomicranges?
recipes/bioconductor-cexor
recipes/bioconductor-systempiper
# TODO: r-phonr seems to loop indefinitely when trying to build.
recipes/r-phonr
# spp looks to be having boost issues
recipes/r-spp
recipes/bioconductor-diffbind
recipes/bioconductor-mmdiff
# try disabling to avoid osx timeouts
recipes/triform2