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Reads are good but throws error: "Sequence/quality scores do not match" #12
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Thanks for the question, and for including the dataset. Unfortunately, I cannot reproduce the error. Here is the command and verbose output:
As you can see, using |
Yes, you are correct. It worked perfectly! |
Dear Sir |
Please open a New Issue. This is unrelated to #12 |
I try GNmerge in Linux but is not running with my simulated datasets.
The header patterns are the following:
My version seems to expect a " " as delimiter to create a single key. Thus, I was getting the error : ..... ": not matched in input files"
I add a " " before the "/" and it solve the issue. I, notice after that a new parameter (-t) was added to handle these situations.
After, another error prompted: "Sequence/quality scores do not match". This is thrown because of "ERRQUAL". The reads do not have any issue and I have been able to run the datasets with many other tools (BBMerge, USEARCH, FLASH, PEAR, etc...)
I am sharing a small dataset, in case you want to investigate what could be the problem?
reads_NC_008261.1.100.101.10_R1.fq.gz
reads_NC_008261.1.100.101.10_R2.fq.gz
Thanks
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