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Popular repositories

  1. NMT_Bioinformatics_2022 NMT_Bioinformatics_2022 Public

    GitHub landing page for all things Bioinformatics at New Mexico Tech, 2022

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  2. NMT_Bioinformatics NMT_Bioinformatics Public

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    A repository for teaching resources that I've developed

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  4. grabContigs grabContigs Public

    Takes a sequence list file (one sequence per line) and an assembly in fasta format as input and outputs a fasta file containing only the sequences present in the list file.

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  5. strappyMcBootClade strappyMcBootClade Public

    The goal of this program is to provide similar functions as DNAsp for Unix based operating systems (e.g., OSX). strappyMcBootClade also offers the ability to estimate population genetic parameters …

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    Takes two fastq read files as input (preferably paired-end reads) and interleaves them.

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