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Co-authored-by: Andrew Janke <floss@apjanke.net>
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Remi-Gau and apjanke committed Nov 13, 2020
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Expand Up @@ -25,14 +25,14 @@ See also [PyBIDS](https://github.com/bids-standard/pybids) for Python and the [B
- read and write JSON files (see `bids.util.jsondecode` and `bids.util.jsonencode`) provided that the right [dependencies](#reading-and-writing-json-files) are installed,
- read and write TSV files (see `bids.util.tsvread` and `bids.util.tsvwrite`),

The behavior of this toolbox assumes that it is interacting with a valid BIDS dataset that should have been validated using [BIDS-validator](https://bids-standard.github.io/bids-validator/). Any unvalidated components may produce undefined behavior. Although, if you're BIDS-y enough, the behavior may be predictable.
The behavior of this toolbox assumes that it is interacting with a valid BIDS dataset that should have been validated using [BIDS-validator](https://bids-standard.github.io/bids-validator/). If the Node.js version of the validator is [installed on your computer](https://github.com/bids-standard/bids-validator#quickstart), you can call it from the matlab prompt using `bids.validate`. Just be aware that any unvalidated components may produce undefined behavior. Although, if you're BIDS-y enough, the behavior may be predictable.


### What this toolbox cannot do... yet

- parse the layout of "BIDS-derivative compatible" datasets (like fMRIprep),
- parse the layout of "BIDS-derivative compatible" datasets (like those generated by fMRIprep),
- create BIDS compatible filenames or folder structures for raw or derivatives datasets,
- basic copying of files to help with derivative dataset generation,
- do basic copying of files to help with derivative dataset generation,
- generate human readable reports of the content of BIDS data with EEG, MEG, iEEG, physio and events data,
- deal with some of the most recent updates or incoming BIDS extensions (basic derivatives, ASL, PET, BIDS model...)
- ...
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