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Checking all installs #705
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I tried both the packages mamba as well as the git install |
What's the output when running |
scikit-learn 0.24.2 py36hc89565f_1 conda-forge
(SqueezeMeta) [a40540@hod localscratch]$ python3 -c 'import sklearn' Even with the error I tried running the pipeline with test data. It ran without error but does it affect the credibility of result??????? |
Not sure which package uses scikit, your results are probable fine if there was no error message. |
Ok then I will do that next week and try again on the test data. Rightnow I am running it on my data. Waiting for any errors. |
Yes, I have fixed this in the dev version, install with
mamba create -n SqueezeMeta -c conda-forge -c bioconda -c anaconda -c fpusan squeezemeta-dev=1.6.2post2 --no-channel-priority
And then configure with
configure_nodb.pl /path/to/db
I will make an official release later this week after I finish testing, but everything seems to be in order so far...
Sobre 11/07/2023 15:32:22, RIJP ***@***.***> escribió:
Hi, I've got same message from test_install.pl. I think version of scikit-learn is not compatible for python 3.6. When installing squeezemeta with mamba, scikit-learn version 0.24.2 is installed. However this version is not compatible for python 3.6. I tried downgrading scikit-learn to 0.20.2 which is compatible for python 3.6, but failed due to dependency problems. Any solution for this?
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Sorry I should have cheked your dev version befor posting. It worked fine. Thanks. *I accidentally deleted follwoing message. Applogize for making mess. Hi, I've got same message from test_install.pl. I think version of scikit-learn is not compatible for python 3.6. When installing squeezemeta with mamba, scikit-learn version 0.24.2 is installed. However this version is not compatible for python 3.6. I tried downgrading scikit-learn to 0.20.2 which is compatible for python 3.6, but failed due to dependency problems. Any solution for this? |
No, it's fine. Dev versions are not normally meant for downloading, sometimes we have some non-working experimental stuff in there |
Should be fixed in ba9a595 and the new release v1.6.2post2 |
The execution is complete but i did not get any error messages for scikit. Seems everything is fine. This is from the previous install,not the updated one you mentioned. Will try the next one as well. If any errors, i will keep you posted |
Even if you got no error messages, CONCOCT binning (if requested) may have failed. In that case the pipeline would have progressed using the results from the other binning methods |
python3 -c 'import sklearn' NOT OK
Missing python library "sklearn"
I have installed the scikit-learn package but still it shows this error on running the test_install.pl
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