-
Notifications
You must be signed in to change notification settings - Fork 3
/
E09_3DLabeling.java
94 lines (80 loc) · 3.53 KB
/
E09_3DLabeling.java
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
/*-
* #%L
* UI component for image segmentation label comparison and selection
* %%
* Copyright (C) 2019 - 2020 DAIS developers
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
* #L%
*/
package sc.fiji.labeleditor.howto.basic;
import sc.fiji.labeleditor.core.model.DefaultLabelEditorModel;
import sc.fiji.labeleditor.plugin.interfaces.bdv.LabelEditorBdvPanel;
import net.imagej.ImageJ;
import net.imglib2.RandomAccess;
import net.imglib2.algorithm.labeling.ConnectedComponents;
import net.imglib2.algorithm.region.hypersphere.HyperSphere;
import net.imglib2.img.Img;
import net.imglib2.img.array.ArrayImgFactory;
import net.imglib2.roi.labeling.ImgLabeling;
import net.imglib2.type.numeric.integer.IntType;
import javax.swing.*;
import java.awt.*;
import java.io.IOException;
import java.util.Random;
/**
* How to active the 3D mode of the LabelEditor
*/
public class E09_3DLabeling {
public void run() {
ImageJ ij = new ImageJ();
ij.launch();
//create image with spheres at random positions
Img<IntType> img = new ArrayImgFactory<>(new IntType()).create(500, 500, 500);
RandomAccess<IntType> ra = img.randomAccess();
Random random = new Random();
for (int i = 0; i < 42; i++) {
System.out.println(i);
ra.setPosition(new int[]{random.nextInt(500), random.nextInt(500), random.nextInt(500)});
HyperSphere<IntType> hyperSphere = new HyperSphere<>(img, ra, 42);
for (IntType value : hyperSphere)
try{value.set(ra.getIntPosition(0));} catch(ArrayIndexOutOfBoundsException ignored) {}
}
//create labeling
ImgLabeling<IntType, IntType> labeling = ij.op().labeling().cca(img, ConnectedComponents.StructuringElement.EIGHT_CONNECTED);
// for 3D mode, one cannot use the ui service yet, so we create our own panel..
LabelEditorBdvPanel panel = new LabelEditorBdvPanel(ij.context());
// .. add model to panel
panel.add(new DefaultLabelEditorModel<>(labeling));
// .. maybe set the display range for the inputs..
panel.getSources().forEach(source -> source.setDisplayRange(0, 100));
// .. and create a frame to show the panel.
JFrame frame = new JFrame("Label editor");
frame.setContentPane(panel);
frame.setMinimumSize(new Dimension(500,500));
frame.pack();
frame.setVisible(true);
}
public static void main(String... args) throws IOException {
new E09_3DLabeling().run();
}
}